Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04325 and MMP_RS04330 are separated by 0 nucleotides MMP_RS04330 and MMP_RS04335 are separated by 51 nucleotides MMP_RS04335 and MMP_RS04340 are separated by 5 nucleotides
MMP_RS04325: MMP_RS04325 - MtaA/CmuA family methyltransferase, at 825,017 to 826,045
_RS04325
MMP_RS04330: MMP_RS04330 - ASKHA domain-containing protein, at 826,046 to 827,824
_RS04330
MMP_RS04335: MMP_RS04335 - GTP-binding protein, at 827,876 to 828,784
_RS04335
MMP_RS04340: MMP_RS04340 - uroporphyrinogen decarboxylase, at 828,790 to 829,653
_RS04340
Position (kb)
826
827
828 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 825.084 kb on - strand at 825.085 kb on + strand at 825.106 kb on - strand at 825.142 kb on + strand, within MMP_RS04325 at 825.249 kb on - strand, within MMP_RS04325 at 825.249 kb on - strand, within MMP_RS04325 at 825.250 kb on + strand, within MMP_RS04325 at 825.310 kb on - strand, within MMP_RS04325 at 825.589 kb on + strand, within MMP_RS04325 at 825.589 kb on + strand, within MMP_RS04325 at 825.731 kb on + strand, within MMP_RS04325 at 825.731 kb on + strand, within MMP_RS04325 at 825.798 kb on - strand, within MMP_RS04325 at 825.814 kb on - strand, within MMP_RS04325 at 826.066 kb on - strand at 826.075 kb on - strand at 826.076 kb on + strand at 826.078 kb on - strand at 826.235 kb on - strand, within MMP_RS04330 at 826.314 kb on - strand, within MMP_RS04330 at 826.461 kb on - strand, within MMP_RS04330 at 826.558 kb on + strand, within MMP_RS04330 at 826.619 kb on + strand, within MMP_RS04330 at 826.630 kb on + strand, within MMP_RS04330 at 826.630 kb on + strand, within MMP_RS04330 at 826.630 kb on + strand, within MMP_RS04330 at 826.645 kb on - strand, within MMP_RS04330 at 826.683 kb on - strand, within MMP_RS04330 at 826.845 kb on + strand, within MMP_RS04330 at 826.926 kb on + strand, within MMP_RS04330 at 826.971 kb on - strand, within MMP_RS04330 at 826.981 kb on - strand, within MMP_RS04330 at 826.982 kb on + strand, within MMP_RS04330 at 827.030 kb on + strand, within MMP_RS04330 at 827.030 kb on + strand, within MMP_RS04330 at 827.058 kb on - strand, within MMP_RS04330 at 827.058 kb on - strand, within MMP_RS04330 at 827.058 kb on - strand, within MMP_RS04330 at 827.059 kb on + strand, within MMP_RS04330 at 827.124 kb on - strand, within MMP_RS04330 at 827.125 kb on + strand, within MMP_RS04330 at 827.197 kb on + strand, within MMP_RS04330 at 827.229 kb on - strand, within MMP_RS04330 at 827.230 kb on + strand, within MMP_RS04330 at 827.265 kb on - strand, within MMP_RS04330 at 827.357 kb on + strand, within MMP_RS04330 at 827.371 kb on + strand, within MMP_RS04330 at 827.401 kb on - strand, within MMP_RS04330 at 827.409 kb on - strand, within MMP_RS04330 at 827.466 kb on - strand, within MMP_RS04330 at 827.484 kb on - strand, within MMP_RS04330 at 827.484 kb on - strand, within MMP_RS04330 at 827.485 kb on + strand, within MMP_RS04330 at 827.485 kb on + strand, within MMP_RS04330 at 827.494 kb on + strand, within MMP_RS04330 at 827.515 kb on + strand, within MMP_RS04330 at 827.669 kb on - strand at 827.669 kb on - strand at 827.670 kb on + strand at 827.671 kb on - strand at 827.757 kb on - strand at 827.758 kb on + strand at 827.762 kb on - strand at 827.762 kb on - strand at 827.763 kb on + strand at 827.763 kb on + strand at 827.763 kb on + strand at 827.763 kb on + strand at 827.763 kb on + strand at 827.763 kb on + strand at 827.766 kb on + strand at 827.789 kb on - strand at 827.800 kb on + strand at 827.830 kb on + strand at 827.833 kb on + strand at 827.841 kb on - strand at 827.844 kb on - strand at 827.851 kb on + strand at 827.862 kb on - strand at 827.873 kb on + strand at 827.895 kb on - strand at 827.896 kb on + strand at 827.929 kb on - strand at 827.930 kb on + strand at 827.931 kb on - strand at 828.077 kb on + strand, within MMP_RS04335 at 828.174 kb on - strand, within MMP_RS04335 at 828.229 kb on - strand, within MMP_RS04335 at 828.230 kb on + strand, within MMP_RS04335 at 828.240 kb on - strand, within MMP_RS04335 at 828.240 kb on - strand, within MMP_RS04335 at 828.394 kb on - strand, within MMP_RS04335 at 828.408 kb on - strand, within MMP_RS04335 at 828.409 kb on + strand, within MMP_RS04335 at 828.427 kb on - strand, within MMP_RS04335 at 828.486 kb on - strand, within MMP_RS04335 at 828.486 kb on - strand, within MMP_RS04335 at 828.487 kb on + strand, within MMP_RS04335 at 828.487 kb on + strand, within MMP_RS04335 at 828.487 kb on + strand, within MMP_RS04335 at 828.487 kb on + strand, within MMP_RS04335 at 828.489 kb on + strand, within MMP_RS04335 at 828.530 kb on + strand, within MMP_RS04335 at 828.616 kb on + strand, within MMP_RS04335 at 828.665 kb on + strand, within MMP_RS04335 at 828.665 kb on + strand, within MMP_RS04335 at 828.668 kb on - strand, within MMP_RS04335 at 828.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 825,084 - -0.5 825,085 + +0.1 825,106 - -0.2 825,142 + MMP_RS04325 0.12 +1.4 825,249 - MMP_RS04325 0.23 -1.6 825,249 - MMP_RS04325 0.23 -0.5 825,250 + MMP_RS04325 0.23 +0.9 825,310 - MMP_RS04325 0.28 +0.7 825,589 + MMP_RS04325 0.56 -0.5 825,589 + MMP_RS04325 0.56 +1.2 825,731 + MMP_RS04325 0.69 +0.5 825,731 + MMP_RS04325 0.69 -1.2 825,798 - MMP_RS04325 0.76 +0.2 825,814 - MMP_RS04325 0.77 +0.2 826,066 - -0.2 826,075 - -1.8 826,076 + +0.1 826,078 - -2.4 826,235 - MMP_RS04330 0.11 -0.4 826,314 - MMP_RS04330 0.15 -0.8 826,461 - MMP_RS04330 0.23 -0.3 826,558 + MMP_RS04330 0.29 -1.4 826,619 + MMP_RS04330 0.32 -1.5 826,630 + MMP_RS04330 0.33 +0.1 826,630 + MMP_RS04330 0.33 +1.2 826,630 + MMP_RS04330 0.33 -3.1 826,645 - MMP_RS04330 0.34 -0.5 826,683 - MMP_RS04330 0.36 -1.6 826,845 + MMP_RS04330 0.45 -2.2 826,926 + MMP_RS04330 0.49 -0.1 826,971 - MMP_RS04330 0.52 -0.7 826,981 - MMP_RS04330 0.53 +1.5 826,982 + MMP_RS04330 0.53 -1.2 827,030 + MMP_RS04330 0.55 -1.1 827,030 + MMP_RS04330 0.55 -1.2 827,058 - MMP_RS04330 0.57 -0.5 827,058 - MMP_RS04330 0.57 -2.0 827,058 - MMP_RS04330 0.57 -1.3 827,059 + MMP_RS04330 0.57 -2.6 827,124 - MMP_RS04330 0.61 -2.0 827,125 + MMP_RS04330 0.61 +1.2 827,197 + MMP_RS04330 0.65 -1.2 827,229 - MMP_RS04330 0.66 +1.6 827,230 + MMP_RS04330 0.67 +1.5 827,265 - MMP_RS04330 0.69 -1.7 827,357 + MMP_RS04330 0.74 +0.7 827,371 + MMP_RS04330 0.74 +1.1 827,401 - MMP_RS04330 0.76 +3.1 827,409 - MMP_RS04330 0.77 +1.7 827,466 - MMP_RS04330 0.80 -1.8 827,484 - MMP_RS04330 0.81 -1.0 827,484 - MMP_RS04330 0.81 -1.0 827,485 + MMP_RS04330 0.81 -0.3 827,485 + MMP_RS04330 0.81 -1.1 827,494 + MMP_RS04330 0.81 -1.4 827,515 + MMP_RS04330 0.83 -1.8 827,669 - -0.5 827,669 - +1.6 827,670 + -0.9 827,671 - +0.7 827,757 - -0.3 827,758 + -1.9 827,762 - +0.5 827,762 - -0.9 827,763 + +0.5 827,763 + -0.3 827,763 + -0.5 827,763 + -0.3 827,763 + +0.8 827,763 + +0.2 827,766 + +0.8 827,789 - -0.1 827,800 + +1.5 827,830 + +0.4 827,833 + +1.1 827,841 - +2.5 827,844 - +1.0 827,851 + +0.1 827,862 - -0.9 827,873 + -2.1 827,895 - -1.9 827,896 + -2.2 827,929 - -0.8 827,930 + +0.3 827,931 - +0.1 828,077 + MMP_RS04335 0.22 +0.4 828,174 - MMP_RS04335 0.33 +1.7 828,229 - MMP_RS04335 0.39 -0.6 828,230 + MMP_RS04335 0.39 +0.6 828,240 - MMP_RS04335 0.40 -0.1 828,240 - MMP_RS04335 0.40 +1.1 828,394 - MMP_RS04335 0.57 -0.5 828,408 - MMP_RS04335 0.59 +0.2 828,409 + MMP_RS04335 0.59 -0.1 828,427 - MMP_RS04335 0.61 +0.8 828,486 - MMP_RS04335 0.67 +1.3 828,486 - MMP_RS04335 0.67 +0.9 828,487 + MMP_RS04335 0.67 +0.9 828,487 + MMP_RS04335 0.67 +0.6 828,487 + MMP_RS04335 0.67 +0.8 828,487 + MMP_RS04335 0.67 +0.3 828,489 + MMP_RS04335 0.67 -0.2 828,530 + MMP_RS04335 0.72 +0.9 828,616 + MMP_RS04335 0.81 +0.5 828,665 + MMP_RS04335 0.87 +1.5 828,665 + MMP_RS04335 0.87 +0.4 828,668 - MMP_RS04335 0.87 +2.0 828,760 + -2.7
Or see this region's nucleotide sequence