Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04015

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04010 and MMP_RS04015 are separated by 0 nucleotidesMMP_RS04015 and MMP_RS04020 are separated by 11 nucleotidesMMP_RS04020 and MMP_RS04025 are separated by 9 nucleotides MMP_RS04010: MMP_RS04010 - ABC transporter substrate-binding protein, at 761,693 to 762,445 _RS04010 MMP_RS04015: MMP_RS04015 - hypothetical protein, at 762,446 to 762,937 _RS04015 MMP_RS04020: MMP_RS04020 - hypothetical protein, at 762,949 to 763,713 _RS04020 MMP_RS04025: MMP_RS04025 - ATPase AAA, at 763,723 to 765,075 _RS04025 Position (kb) 762 763Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 761.479 kb on - strandat 761.483 kb on - strandat 761.520 kb on - strandat 761.520 kb on - strandat 761.520 kb on - strandat 761.521 kb on + strandat 761.522 kb on - strandat 761.522 kb on - strandat 761.523 kb on + strandat 761.523 kb on + strandat 761.537 kb on + strandat 761.540 kb on + strandat 761.552 kb on - strandat 761.560 kb on - strandat 761.561 kb on + strandat 761.562 kb on - strandat 761.562 kb on - strandat 761.562 kb on - strandat 761.563 kb on + strandat 761.563 kb on + strandat 761.591 kb on - strandat 761.593 kb on - strandat 761.593 kb on - strandat 761.594 kb on + strandat 761.600 kb on + strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.605 kb on - strandat 761.605 kb on - strandat 761.606 kb on + strandat 761.606 kb on + strandat 761.632 kb on - strandat 761.633 kb on + strandat 761.633 kb on + strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.643 kb on + strandat 761.643 kb on + strandat 761.644 kb on - strandat 761.644 kb on - strandat 761.645 kb on + strandat 761.645 kb on + strandat 761.646 kb on - strandat 761.689 kb on - strandat 761.690 kb on + strandat 761.803 kb on - strand, within MMP_RS04010at 761.803 kb on - strand, within MMP_RS04010at 761.812 kb on + strand, within MMP_RS04010at 761.826 kb on + strand, within MMP_RS04010at 761.828 kb on + strand, within MMP_RS04010at 761.860 kb on + strand, within MMP_RS04010at 761.860 kb on + strand, within MMP_RS04010at 761.865 kb on - strand, within MMP_RS04010at 761.866 kb on + strand, within MMP_RS04010at 761.868 kb on - strand, within MMP_RS04010at 761.869 kb on + strand, within MMP_RS04010at 761.871 kb on + strand, within MMP_RS04010at 761.895 kb on - strand, within MMP_RS04010at 761.896 kb on + strand, within MMP_RS04010at 761.913 kb on - strand, within MMP_RS04010at 761.913 kb on - strand, within MMP_RS04010at 761.970 kb on - strand, within MMP_RS04010at 761.975 kb on - strand, within MMP_RS04010at 761.976 kb on + strand, within MMP_RS04010at 762.034 kb on - strand, within MMP_RS04010at 762.038 kb on - strand, within MMP_RS04010at 762.038 kb on - strand, within MMP_RS04010at 762.038 kb on - strand, within MMP_RS04010at 762.048 kb on - strand, within MMP_RS04010at 762.068 kb on + strand, within MMP_RS04010at 762.216 kb on - strand, within MMP_RS04010at 762.250 kb on - strand, within MMP_RS04010at 762.251 kb on + strand, within MMP_RS04010at 762.253 kb on - strand, within MMP_RS04010at 762.254 kb on + strand, within MMP_RS04010at 762.263 kb on - strand, within MMP_RS04010at 762.267 kb on - strand, within MMP_RS04010at 762.268 kb on + strand, within MMP_RS04010at 762.278 kb on - strand, within MMP_RS04010at 762.278 kb on - strand, within MMP_RS04010at 762.278 kb on - strand, within MMP_RS04010at 762.323 kb on - strand, within MMP_RS04010at 762.323 kb on - strand, within MMP_RS04010at 762.346 kb on - strand, within MMP_RS04010at 762.411 kb on - strandat 762.415 kb on - strandat 762.420 kb on - strandat 762.421 kb on + strandat 762.437 kb on + strandat 762.437 kb on + strandat 762.447 kb on - strandat 762.447 kb on - strandat 762.447 kb on - strandat 762.448 kb on + strandat 762.751 kb on - strand, within MMP_RS04015at 762.824 kb on + strand, within MMP_RS04015at 762.824 kb on + strand, within MMP_RS04015at 762.950 kb on - strandat 763.085 kb on - strand, within MMP_RS04020at 763.184 kb on + strand, within MMP_RS04020at 763.224 kb on + strand, within MMP_RS04020at 763.276 kb on - strand, within MMP_RS04020at 763.280 kb on + strand, within MMP_RS04020at 763.282 kb on + strand, within MMP_RS04020at 763.373 kb on + strand, within MMP_RS04020at 763.490 kb on + strand, within MMP_RS04020at 763.530 kb on + strand, within MMP_RS04020at 763.688 kb on + strandat 763.725 kb on + strandat 763.792 kb on + strandat 763.876 kb on - strand, within MMP_RS04025at 763.913 kb on + strand, within MMP_RS04025

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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761,479 - +0.8
761,483 - -0.9
761,520 - -0.8
761,520 - -1.9
761,520 - -0.3
761,521 + +1.9
761,522 - -0.7
761,522 - -0.2
761,523 + -0.2
761,523 + -0.8
761,537 + -1.8
761,540 + +0.2
761,552 - -1.2
761,560 - -0.5
761,561 + +1.7
761,562 - -1.5
761,562 - +0.8
761,562 - -0.5
761,563 + -0.1
761,563 + -1.3
761,591 - -1.5
761,593 - +0.1
761,593 - +2.8
761,594 + +0.0
761,600 + +2.3
761,601 - -0.2
761,601 - +1.2
761,601 - -1.8
761,601 - -0.7
761,601 - -0.9
761,602 + +0.4
761,602 + -0.0
761,602 + -0.3
761,602 + -0.6
761,602 + -0.3
761,605 - +0.1
761,605 - -1.8
761,606 + +1.8
761,606 + -0.6
761,632 - -0.8
761,633 + +1.7
761,633 + +0.8
761,642 - -0.1
761,642 - -0.9
761,642 - -1.2
761,642 - -1.9
761,642 - -2.3
761,643 + +0.2
761,643 + -0.6
761,644 - -1.2
761,644 - +1.0
761,645 + -0.3
761,645 + -2.6
761,646 - -0.3
761,689 - -0.2
761,690 + -1.0
761,803 - MMP_RS04010 0.15 +1.3
761,803 - MMP_RS04010 0.15 +1.5
761,812 + MMP_RS04010 0.16 +0.0
761,826 + MMP_RS04010 0.18 -1.2
761,828 + MMP_RS04010 0.18 -0.1
761,860 + MMP_RS04010 0.22 +1.3
761,860 + MMP_RS04010 0.22 -0.8
761,865 - MMP_RS04010 0.23 -0.9
761,866 + MMP_RS04010 0.23 -0.6
761,868 - MMP_RS04010 0.23 -0.9
761,869 + MMP_RS04010 0.23 -1.9
761,871 + MMP_RS04010 0.24 -1.9
761,895 - MMP_RS04010 0.27 -1.2
761,896 + MMP_RS04010 0.27 -1.7
761,913 - MMP_RS04010 0.29 -2.8
761,913 - MMP_RS04010 0.29 +1.1
761,970 - MMP_RS04010 0.37 +0.5
761,975 - MMP_RS04010 0.37 -2.4
761,976 + MMP_RS04010 0.38 +2.2
762,034 - MMP_RS04010 0.45 +0.4
762,038 - MMP_RS04010 0.46 +1.3
762,038 - MMP_RS04010 0.46 +2.0
762,038 - MMP_RS04010 0.46 -0.7
762,048 - MMP_RS04010 0.47 +0.4
762,068 + MMP_RS04010 0.50 -1.2
762,216 - MMP_RS04010 0.69 -0.5
762,250 - MMP_RS04010 0.74 +2.7
762,251 + MMP_RS04010 0.74 +0.8
762,253 - MMP_RS04010 0.74 -0.8
762,254 + MMP_RS04010 0.75 -1.5
762,263 - MMP_RS04010 0.76 -1.7
762,267 - MMP_RS04010 0.76 +0.5
762,268 + MMP_RS04010 0.76 -0.9
762,278 - MMP_RS04010 0.78 +1.4
762,278 - MMP_RS04010 0.78 +0.1
762,278 - MMP_RS04010 0.78 -1.0
762,323 - MMP_RS04010 0.84 +1.5
762,323 - MMP_RS04010 0.84 +1.5
762,346 - MMP_RS04010 0.87 -0.9
762,411 - +1.7
762,415 - -1.7
762,420 - -2.1
762,421 + +2.3
762,437 + -0.5
762,437 + -0.3
762,447 - +0.5
762,447 - +1.6
762,447 - -1.5
762,448 + -0.1
762,751 - MMP_RS04015 0.62 -0.1
762,824 + MMP_RS04015 0.77 -0.2
762,824 + MMP_RS04015 0.77 -1.0
762,950 - -0.8
763,085 - MMP_RS04020 0.18 +0.4
763,184 + MMP_RS04020 0.31 -2.3
763,224 + MMP_RS04020 0.36 -1.3
763,276 - MMP_RS04020 0.43 +0.1
763,280 + MMP_RS04020 0.43 +0.4
763,282 + MMP_RS04020 0.44 -0.2
763,373 + MMP_RS04020 0.55 -0.5
763,490 + MMP_RS04020 0.71 +0.7
763,530 + MMP_RS04020 0.76 +0.6
763,688 + -0.2
763,725 + +0.2
763,792 + -0.5
763,876 - MMP_RS04025 0.11 -1.7
763,913 + MMP_RS04025 0.14 +0.5

Or see this region's nucleotide sequence