Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03890 and MMP_RS08995 are separated by 2 nucleotides MMP_RS08995 and MMP_RS09000 are separated by 12 nucleotides MMP_RS09000 and MMP_RS03895 are separated by 332 nucleotides MMP_RS03895 and MMP_RS03900 are separated by 10 nucleotides MMP_RS03900 and MMP_RS03905 are separated by 19 nucleotides MMP_RS03905 and MMP_RS03910 are separated by 56 nucleotides MMP_RS03910 and MMP_RS03915 are separated by 107 nucleotides
MMP_RS03890: MMP_RS03890 - DUF2540 domain-containing protein, at 738,278 to 738,538
_RS03890
MMP_RS08995: MMP_RS08995 - hypothetical protein, at 738,541 to 738,699
_RS08995
MMP_RS09000: MMP_RS09000 - hypothetical protein, at 738,712 to 738,867
_RS09000
MMP_RS03895: MMP_RS03895 - hypothetical protein, at 739,200 to 739,430
_RS03895
MMP_RS03900: MMP_RS03900 - minichromosome maintenance protein MCM, at 739,441 to 741,447
_RS03900
MMP_RS03905: MMP_RS03905 - hypothetical protein, at 741,467 to 741,994
_RS03905
MMP_RS03910: MMP_RS03910 - hypothetical protein, at 742,051 to 742,263
_RS03910
MMP_RS03915: MMP_RS03915 - DUF2080 family transposase-associated protein, at 742,371 to 742,568
_RS03915
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 738.457 kb on - strand, within MMP_RS03890 at 738.464 kb on - strand, within MMP_RS03890 at 738.470 kb on + strand, within MMP_RS03890 at 738.473 kb on - strand, within MMP_RS03890 at 738.474 kb on + strand, within MMP_RS03890 at 738.524 kb on - strand at 738.539 kb on + strand at 738.543 kb on + strand at 738.595 kb on + strand, within MMP_RS08995 at 739.090 kb on - strand at 739.211 kb on - strand at 739.213 kb on - strand at 739.257 kb on + strand, within MMP_RS03895 at 739.308 kb on - strand, within MMP_RS03895 at 739.747 kb on - strand, within MMP_RS03900 at 739.910 kb on - strand, within MMP_RS03900 at 739.911 kb on + strand, within MMP_RS03900 at 739.920 kb on + strand, within MMP_RS03900 at 740.211 kb on - strand, within MMP_RS03900 at 740.214 kb on - strand, within MMP_RS03900 at 740.215 kb on + strand, within MMP_RS03900 at 740.284 kb on + strand, within MMP_RS03900 at 740.354 kb on - strand, within MMP_RS03900 at 740.589 kb on + strand, within MMP_RS03900 at 741.300 kb on + strand at 741.320 kb on - strand at 741.453 kb on + strand at 741.469 kb on + strand at 742.117 kb on - strand, within MMP_RS03910 at 742.225 kb on + strand, within MMP_RS03910 at 742.249 kb on - strand at 742.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 738,457 - MMP_RS03890 0.69 -0.3 738,464 - MMP_RS03890 0.71 -0.4 738,470 + MMP_RS03890 0.74 +0.2 738,473 - MMP_RS03890 0.75 -1.3 738,474 + MMP_RS03890 0.75 -0.0 738,524 - -1.8 738,539 + -0.2 738,543 + -0.5 738,595 + MMP_RS08995 0.34 -1.4 739,090 - +1.0 739,211 - -1.8 739,213 - -1.3 739,257 + MMP_RS03895 0.25 +0.2 739,308 - MMP_RS03895 0.47 -1.2 739,747 - MMP_RS03900 0.15 -0.5 739,910 - MMP_RS03900 0.23 -0.1 739,911 + MMP_RS03900 0.23 -0.8 739,920 + MMP_RS03900 0.24 -0.3 740,211 - MMP_RS03900 0.38 -0.2 740,214 - MMP_RS03900 0.39 -0.1 740,215 + MMP_RS03900 0.39 -0.1 740,284 + MMP_RS03900 0.42 -1.7 740,354 - MMP_RS03900 0.45 +2.3 740,589 + MMP_RS03900 0.57 -1.2 741,300 + +0.6 741,320 - -1.1 741,453 + +0.6 741,469 + -2.5 742,117 - MMP_RS03910 0.31 -0.7 742,225 + MMP_RS03910 0.82 +1.9 742,249 - -0.5 742,349 + +1.4
Or see this region's nucleotide sequence