Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides MMP_RS03795 and MMP_RS03800 are separated by 352 nucleotides MMP_RS03800 and MMP_RS03805 are separated by 35 nucleotides
MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317
_RS03790
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468
_RS03800
MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444
_RS03805
Position (kb)
717
718 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 716.252 kb on - strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.258 kb on - strand, within MMP_RS03790 at 716.259 kb on + strand, within MMP_RS03790 at 716.326 kb on - strand at 716.350 kb on - strand at 716.388 kb on + strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.391 kb on - strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.425 kb on + strand, within MMP_RS03795 at 716.615 kb on + strand, within MMP_RS03795 at 716.686 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.694 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.706 kb on - strand, within MMP_RS03795 at 716.707 kb on + strand, within MMP_RS03795 at 716.773 kb on + strand, within MMP_RS03795 at 716.886 kb on - strand at 716.894 kb on - strand at 716.906 kb on - strand at 716.906 kb on - strand at 716.927 kb on - strand at 716.964 kb on - strand at 716.965 kb on + strand at 717.017 kb on + strand at 717.040 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.043 kb on + strand at 717.045 kb on + strand at 717.045 kb on + strand at 717.163 kb on - strand at 717.163 kb on - strand at 717.164 kb on + strand at 717.164 kb on + strand at 717.166 kb on - strand at 717.191 kb on + strand at 717.195 kb on - strand at 717.196 kb on + strand at 717.199 kb on - strand at 717.215 kb on - strand at 717.215 kb on - strand at 717.277 kb on + strand, within MMP_RS03800 at 717.277 kb on + strand, within MMP_RS03800 at 717.283 kb on - strand, within MMP_RS03800 at 717.435 kb on + strand, within MMP_RS03800 at 717.456 kb on - strand at 717.484 kb on + strand at 717.586 kb on - strand at 717.587 kb on + strand at 717.637 kb on + strand at 717.637 kb on + strand at 717.638 kb on - strand at 717.639 kb on + strand at 717.894 kb on - strand, within MMP_RS03805 at 718.014 kb on - strand, within MMP_RS03805 at 718.026 kb on - strand, within MMP_RS03805 at 718.061 kb on + strand, within MMP_RS03805 at 718.228 kb on + strand, within MMP_RS03805 at 718.297 kb on - strand, within MMP_RS03805 at 718.319 kb on - strand, within MMP_RS03805 at 718.388 kb on - strand, within MMP_RS03805 at 718.388 kb on - strand, within MMP_RS03805 at 718.399 kb on - strand, within MMP_RS03805 at 718.399 kb on - strand, within MMP_RS03805 at 718.399 kb on - strand, within MMP_RS03805 at 718.400 kb on + strand, within MMP_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 716,252 - MMP_RS03790 0.85 -1.4 716,252 - MMP_RS03790 0.85 +0.4 716,258 - MMP_RS03790 0.86 -1.4 716,259 + MMP_RS03790 0.86 -0.8 716,326 - -0.3 716,350 - -0.7 716,388 + MMP_RS03795 0.11 -0.4 716,389 - MMP_RS03795 0.11 -0.2 716,389 - MMP_RS03795 0.11 +1.2 716,389 - MMP_RS03795 0.11 +1.0 716,389 - MMP_RS03795 0.11 +0.7 716,389 - MMP_RS03795 0.11 -1.1 716,389 - MMP_RS03795 0.11 +0.6 716,390 + MMP_RS03795 0.12 +1.3 716,390 + MMP_RS03795 0.12 +1.3 716,390 + MMP_RS03795 0.12 +0.4 716,391 - MMP_RS03795 0.12 +1.4 716,392 + MMP_RS03795 0.12 -0.5 716,392 + MMP_RS03795 0.12 +1.7 716,392 + MMP_RS03795 0.12 +1.0 716,425 + MMP_RS03795 0.18 +0.5 716,615 + MMP_RS03795 0.52 +1.2 716,686 - MMP_RS03795 0.65 +0.5 716,693 - MMP_RS03795 0.66 +0.1 716,693 - MMP_RS03795 0.66 +0.3 716,694 + MMP_RS03795 0.66 -1.6 716,700 + MMP_RS03795 0.67 +0.1 716,700 + MMP_RS03795 0.67 -0.4 716,706 - MMP_RS03795 0.68 +0.2 716,707 + MMP_RS03795 0.68 -2.6 716,773 + MMP_RS03795 0.80 +1.8 716,886 - -0.7 716,894 - +0.5 716,906 - -1.6 716,906 - -1.0 716,927 - -3.1 716,964 - +1.0 716,965 + +0.0 717,017 + +0.3 717,040 - +0.1 717,041 + -0.1 717,042 - -0.1 717,043 + +0.4 717,045 + -1.0 717,045 + -0.4 717,163 - -0.1 717,163 - -1.2 717,164 + -2.1 717,164 + -0.1 717,166 - -1.0 717,191 + +0.3 717,195 - +0.6 717,196 + +0.4 717,199 - +0.5 717,215 - +0.3 717,215 - +1.2 717,277 + MMP_RS03800 0.18 -1.8 717,277 + MMP_RS03800 0.18 -2.4 717,283 - MMP_RS03800 0.21 -2.0 717,435 + MMP_RS03800 0.85 -0.5 717,456 - +0.1 717,484 + -0.4 717,586 - -0.0 717,587 + -1.3 717,637 + -2.3 717,637 + -1.2 717,638 - +1.9 717,639 + +0.8 717,894 - MMP_RS03805 0.20 +1.8 718,014 - MMP_RS03805 0.26 +0.1 718,026 - MMP_RS03805 0.27 +1.8 718,061 + MMP_RS03805 0.29 -1.8 718,228 + MMP_RS03805 0.37 +0.8 718,297 - MMP_RS03805 0.41 -0.3 718,319 - MMP_RS03805 0.42 -0.3 718,388 - MMP_RS03805 0.46 +0.9 718,388 - MMP_RS03805 0.46 -1.5 718,399 - MMP_RS03805 0.46 +0.5 718,399 - MMP_RS03805 0.46 +0.6 718,399 - MMP_RS03805 0.46 +0.4 718,400 + MMP_RS03805 0.46 -1.1
Or see this region's nucleotide sequence