Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03615 and MMP_RS03620 are separated by 5 nucleotides MMP_RS03620 and MMP_RS03625 are separated by 85 nucleotides MMP_RS03625 and MMP_RS03630 are separated by 65 nucleotides
MMP_RS03615: MMP_RS03615 - 4Fe-4S binding protein, at 678,832 to 679,533
_RS03615
MMP_RS03620: MMP_RS03620 - hypothetical protein, at 679,539 to 680,084
_RS03620
MMP_RS03625: MMP_RS03625 - cell wall-binding protein, at 680,170 to 681,129
_RS03625
MMP_RS03630: MMP_RS03630 - hypothetical protein, at 681,195 to 682,061
_RS03630
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 679.174 kb on + strand, within MMP_RS03615 at 679.179 kb on - strand, within MMP_RS03615 at 679.215 kb on + strand, within MMP_RS03615 at 679.252 kb on - strand, within MMP_RS03615 at 679.330 kb on - strand, within MMP_RS03615 at 679.332 kb on - strand, within MMP_RS03615 at 679.384 kb on - strand, within MMP_RS03615 at 679.385 kb on + strand, within MMP_RS03615 at 679.461 kb on - strand, within MMP_RS03615 at 679.484 kb on + strand at 679.668 kb on - strand, within MMP_RS03620 at 679.669 kb on + strand, within MMP_RS03620 at 679.680 kb on - strand, within MMP_RS03620 at 679.702 kb on - strand, within MMP_RS03620 at 679.704 kb on - strand, within MMP_RS03620 at 679.705 kb on + strand, within MMP_RS03620 at 679.748 kb on - strand, within MMP_RS03620 at 679.749 kb on + strand, within MMP_RS03620 at 679.753 kb on + strand, within MMP_RS03620 at 679.811 kb on - strand, within MMP_RS03620 at 679.814 kb on + strand, within MMP_RS03620 at 679.847 kb on + strand, within MMP_RS03620 at 679.902 kb on - strand, within MMP_RS03620 at 679.960 kb on - strand, within MMP_RS03620 at 680.096 kb on - strand at 680.097 kb on + strand at 680.099 kb on + strand at 680.099 kb on + strand at 680.156 kb on + strand at 680.158 kb on + strand at 680.158 kb on + strand at 680.242 kb on - strand at 680.388 kb on + strand, within MMP_RS03625 at 680.393 kb on - strand, within MMP_RS03625 at 680.393 kb on - strand, within MMP_RS03625 at 680.394 kb on + strand, within MMP_RS03625 at 680.414 kb on - strand, within MMP_RS03625 at 680.603 kb on - strand, within MMP_RS03625 at 680.609 kb on - strand, within MMP_RS03625 at 680.624 kb on + strand, within MMP_RS03625 at 680.947 kb on - strand, within MMP_RS03625 at 681.015 kb on - strand, within MMP_RS03625 at 681.015 kb on - strand, within MMP_RS03625 at 681.092 kb on + strand at 681.103 kb on - strand at 681.104 kb on + strand at 681.164 kb on - strand at 681.165 kb on + strand at 681.170 kb on - strand at 681.180 kb on - strand at 681.182 kb on - strand at 681.183 kb on + strand at 681.183 kb on + strand at 681.232 kb on - strand at 681.233 kb on + strand at 681.306 kb on - strand, within MMP_RS03630 at 681.386 kb on - strand, within MMP_RS03630 at 681.430 kb on + strand, within MMP_RS03630 at 681.488 kb on - strand, within MMP_RS03630 at 681.492 kb on - strand, within MMP_RS03630 at 681.492 kb on - strand, within MMP_RS03630 at 681.493 kb on + strand, within MMP_RS03630 at 681.497 kb on + strand, within MMP_RS03630 at 681.497 kb on + strand, within MMP_RS03630 at 681.695 kb on - strand, within MMP_RS03630 at 681.696 kb on + strand, within MMP_RS03630 at 681.726 kb on - strand, within MMP_RS03630 at 681.732 kb on - strand, within MMP_RS03630 at 681.756 kb on + strand, within MMP_RS03630 at 681.756 kb on + strand, within MMP_RS03630 at 681.766 kb on - strand, within MMP_RS03630 at 681.768 kb on - strand, within MMP_RS03630 at 681.768 kb on - strand, within MMP_RS03630 at 681.769 kb on + strand, within MMP_RS03630 at 681.769 kb on + strand, within MMP_RS03630 at 681.799 kb on + strand, within MMP_RS03630 at 681.811 kb on - strand, within MMP_RS03630 at 681.840 kb on - strand, within MMP_RS03630 at 681.841 kb on + strand, within MMP_RS03630 at 681.845 kb on - strand, within MMP_RS03630 at 681.873 kb on - strand, within MMP_RS03630 at 681.918 kb on - strand, within MMP_RS03630 at 681.918 kb on - strand, within MMP_RS03630 at 681.921 kb on + strand, within MMP_RS03630 at 681.928 kb on - strand, within MMP_RS03630 at 681.987 kb on - strand at 682.023 kb on - strand at 682.077 kb on - strand at 682.077 kb on - strand at 682.078 kb on + strand at 682.078 kb on + strand at 682.081 kb on - strand at 682.081 kb on - strand at 682.081 kb on - strand at 682.081 kb on - strand at 682.082 kb on + strand at 682.082 kb on + strand at 682.082 kb on + strand at 682.082 kb on + strand at 682.083 kb on - strand at 682.083 kb on - strand at 682.107 kb on - strand at 682.107 kb on - strand at 682.108 kb on + strand at 682.108 kb on + strand at 682.109 kb on - strand at 682.109 kb on - strand at 682.113 kb on - strand at 682.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 679,174 + MMP_RS03615 0.49 +0.3 679,179 - MMP_RS03615 0.49 +2.1 679,215 + MMP_RS03615 0.55 -0.6 679,252 - MMP_RS03615 0.60 +1.8 679,330 - MMP_RS03615 0.71 +1.4 679,332 - MMP_RS03615 0.71 +2.1 679,384 - MMP_RS03615 0.79 -1.7 679,385 + MMP_RS03615 0.79 +1.2 679,461 - MMP_RS03615 0.90 +2.3 679,484 + -1.5 679,668 - MMP_RS03620 0.24 -1.7 679,669 + MMP_RS03620 0.24 +2.0 679,680 - MMP_RS03620 0.26 -1.0 679,702 - MMP_RS03620 0.30 +1.6 679,704 - MMP_RS03620 0.30 +0.5 679,705 + MMP_RS03620 0.30 +1.5 679,748 - MMP_RS03620 0.38 +1.5 679,749 + MMP_RS03620 0.38 +1.6 679,753 + MMP_RS03620 0.39 +1.1 679,811 - MMP_RS03620 0.50 +0.1 679,814 + MMP_RS03620 0.50 +1.4 679,847 + MMP_RS03620 0.56 +0.4 679,902 - MMP_RS03620 0.66 +0.8 679,960 - MMP_RS03620 0.77 +1.8 680,096 - +2.4 680,097 + -1.2 680,099 + -0.4 680,099 + +0.0 680,156 + -0.4 680,158 + +2.1 680,158 + -3.0 680,242 - +0.9 680,388 + MMP_RS03625 0.23 -1.4 680,393 - MMP_RS03625 0.23 -0.3 680,393 - MMP_RS03625 0.23 -0.2 680,394 + MMP_RS03625 0.23 -1.3 680,414 - MMP_RS03625 0.25 +0.5 680,603 - MMP_RS03625 0.45 -0.4 680,609 - MMP_RS03625 0.46 -1.4 680,624 + MMP_RS03625 0.47 -0.9 680,947 - MMP_RS03625 0.81 +0.2 681,015 - MMP_RS03625 0.88 -1.1 681,015 - MMP_RS03625 0.88 +0.1 681,092 + +1.7 681,103 - +0.4 681,104 + -1.2 681,164 - +0.9 681,165 + +0.2 681,170 - +0.7 681,180 - -0.2 681,182 - +0.7 681,183 + +0.6 681,183 + +0.7 681,232 - -2.3 681,233 + +1.1 681,306 - MMP_RS03630 0.13 -0.1 681,386 - MMP_RS03630 0.22 -0.9 681,430 + MMP_RS03630 0.27 -0.9 681,488 - MMP_RS03630 0.34 +0.0 681,492 - MMP_RS03630 0.34 -0.1 681,492 - MMP_RS03630 0.34 -1.5 681,493 + MMP_RS03630 0.34 +0.1 681,497 + MMP_RS03630 0.35 -1.7 681,497 + MMP_RS03630 0.35 -1.4 681,695 - MMP_RS03630 0.58 +0.0 681,696 + MMP_RS03630 0.58 +2.2 681,726 - MMP_RS03630 0.61 +0.5 681,732 - MMP_RS03630 0.62 -1.0 681,756 + MMP_RS03630 0.65 -0.1 681,756 + MMP_RS03630 0.65 -0.1 681,766 - MMP_RS03630 0.66 +0.9 681,768 - MMP_RS03630 0.66 +1.7 681,768 - MMP_RS03630 0.66 -2.5 681,769 + MMP_RS03630 0.66 -2.0 681,769 + MMP_RS03630 0.66 -1.2 681,799 + MMP_RS03630 0.70 -1.8 681,811 - MMP_RS03630 0.71 -0.0 681,840 - MMP_RS03630 0.74 +0.3 681,841 + MMP_RS03630 0.75 +1.6 681,845 - MMP_RS03630 0.75 -1.0 681,873 - MMP_RS03630 0.78 +2.8 681,918 - MMP_RS03630 0.83 +1.3 681,918 - MMP_RS03630 0.83 +1.2 681,921 + MMP_RS03630 0.84 +2.1 681,928 - MMP_RS03630 0.85 -0.7 681,987 - -0.6 682,023 - -0.0 682,077 - +0.1 682,077 - -0.7 682,078 + +1.9 682,078 + -0.7 682,081 - -0.9 682,081 - +1.1 682,081 - +1.1 682,081 - +1.4 682,082 + +0.7 682,082 + -0.7 682,082 + -0.7 682,082 + +1.7 682,083 - +0.1 682,083 - -1.1 682,107 - +0.7 682,107 - +0.4 682,108 + -0.2 682,108 + +1.9 682,109 - -0.8 682,109 - +1.7 682,113 - +1.7 682,114 + +1.4
Or see this region's nucleotide sequence