Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03555 and MMP_RS03560 are separated by 102 nucleotides MMP_RS03560 and MMP_RS03565 are separated by 90 nucleotides MMP_RS03565 and MMP_RS03570 are separated by 36 nucleotides
MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622
_RS03555
MMP_RS03560: MMP_RS03560 - Na+/H+ antiporter NhaC family protein, at 666,725 to 668,302
_RS03560
MMP_RS03565: MMP_RS03565 - uracil phosphoribosyltransferase, at 668,393 to 669,088
_RS03565
MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366
_RS03570
Position (kb)
666
667
668
669 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 665.754 kb on - strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.785 kb on + strand, within MMP_RS03555 at 665.788 kb on - strand, within MMP_RS03555 at 666.107 kb on - strand, within MMP_RS03555 at 666.165 kb on - strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.166 kb on + strand, within MMP_RS03555 at 666.397 kb on - strand, within MMP_RS03555 at 666.404 kb on + strand, within MMP_RS03555 at 666.621 kb on + strand at 666.727 kb on + strand at 666.756 kb on - strand at 666.935 kb on + strand, within MMP_RS03560 at 666.935 kb on + strand, within MMP_RS03560 at 666.969 kb on - strand, within MMP_RS03560 at 666.969 kb on - strand, within MMP_RS03560 at 666.969 kb on - strand, within MMP_RS03560 at 666.970 kb on + strand, within MMP_RS03560 at 666.970 kb on + strand, within MMP_RS03560 at 666.970 kb on + strand, within MMP_RS03560 at 666.971 kb on - strand, within MMP_RS03560 at 666.972 kb on + strand, within MMP_RS03560 at 667.084 kb on - strand, within MMP_RS03560 at 667.085 kb on + strand, within MMP_RS03560 at 667.085 kb on + strand, within MMP_RS03560 at 667.112 kb on - strand, within MMP_RS03560 at 667.115 kb on - strand, within MMP_RS03560 at 667.124 kb on - strand, within MMP_RS03560 at 667.176 kb on - strand, within MMP_RS03560 at 667.226 kb on - strand, within MMP_RS03560 at 667.227 kb on + strand, within MMP_RS03560 at 667.228 kb on - strand, within MMP_RS03560 at 667.229 kb on + strand, within MMP_RS03560 at 667.237 kb on - strand, within MMP_RS03560 at 667.315 kb on - strand, within MMP_RS03560 at 667.321 kb on + strand, within MMP_RS03560 at 667.331 kb on + strand, within MMP_RS03560 at 667.337 kb on - strand, within MMP_RS03560 at 667.346 kb on - strand, within MMP_RS03560 at 667.466 kb on - strand, within MMP_RS03560 at 667.631 kb on + strand, within MMP_RS03560 at 667.662 kb on - strand, within MMP_RS03560 at 667.662 kb on - strand, within MMP_RS03560 at 667.663 kb on + strand, within MMP_RS03560 at 667.663 kb on + strand, within MMP_RS03560 at 667.663 kb on + strand, within MMP_RS03560 at 667.666 kb on - strand, within MMP_RS03560 at 667.666 kb on - strand, within MMP_RS03560 at 667.666 kb on - strand, within MMP_RS03560 at 667.666 kb on - strand, within MMP_RS03560 at 667.667 kb on + strand, within MMP_RS03560 at 667.667 kb on + strand, within MMP_RS03560 at 667.671 kb on - strand, within MMP_RS03560 at 667.671 kb on - strand, within MMP_RS03560 at 667.672 kb on + strand, within MMP_RS03560 at 667.672 kb on + strand, within MMP_RS03560 at 667.787 kb on - strand, within MMP_RS03560 at 667.796 kb on - strand, within MMP_RS03560 at 667.823 kb on + strand, within MMP_RS03560 at 667.824 kb on - strand, within MMP_RS03560 at 667.824 kb on - strand, within MMP_RS03560 at 667.824 kb on - strand, within MMP_RS03560 at 667.825 kb on + strand, within MMP_RS03560 at 668.057 kb on - strand, within MMP_RS03560 at 668.061 kb on + strand, within MMP_RS03560 at 668.121 kb on + strand, within MMP_RS03560 at 668.144 kb on + strand, within MMP_RS03560 at 668.147 kb on - strand at 668.152 kb on - strand at 668.173 kb on - strand at 668.193 kb on + strand at 668.193 kb on + strand at 668.229 kb on - strand at 668.285 kb on - strand at 668.286 kb on + strand at 668.289 kb on + strand at 668.302 kb on - strand at 668.302 kb on - strand at 668.307 kb on + strand at 668.307 kb on + strand at 668.308 kb on - strand at 668.309 kb on + strand at 668.329 kb on + strand at 668.354 kb on + strand at 668.354 kb on + strand at 668.356 kb on + strand at 668.386 kb on - strand at 668.386 kb on - strand at 668.386 kb on - strand at 668.386 kb on - strand at 668.386 kb on - strand at 668.480 kb on - strand, within MMP_RS03565 at 668.480 kb on - strand, within MMP_RS03565 at 668.484 kb on - strand, within MMP_RS03565 at 668.494 kb on - strand, within MMP_RS03565 at 668.591 kb on - strand, within MMP_RS03565 at 668.648 kb on + strand, within MMP_RS03565 at 668.719 kb on + strand, within MMP_RS03565 at 668.729 kb on - strand, within MMP_RS03565 at 668.730 kb on + strand, within MMP_RS03565 at 668.734 kb on - strand, within MMP_RS03565 at 668.842 kb on - strand, within MMP_RS03565 at 668.845 kb on - strand, within MMP_RS03565 at 668.860 kb on - strand, within MMP_RS03565 at 669.032 kb on - strand at 669.084 kb on + strand at 669.088 kb on - strand at 669.114 kb on + strand at 669.119 kb on + strand at 669.279 kb on + strand, within MMP_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 665,754 - MMP_RS03555 0.11 -0.4 665,785 + MMP_RS03555 0.15 +1.4 665,785 + MMP_RS03555 0.15 +1.2 665,788 - MMP_RS03555 0.15 +0.1 666,107 - MMP_RS03555 0.47 +1.4 666,165 - MMP_RS03555 0.53 +0.3 666,166 + MMP_RS03555 0.53 -0.2 666,166 + MMP_RS03555 0.53 +0.4 666,166 + MMP_RS03555 0.53 +1.0 666,166 + MMP_RS03555 0.53 -0.2 666,397 - MMP_RS03555 0.77 -1.0 666,404 + MMP_RS03555 0.78 +1.4 666,621 + -0.6 666,727 + +0.3 666,756 - +0.8 666,935 + MMP_RS03560 0.13 -0.9 666,935 + MMP_RS03560 0.13 -1.2 666,969 - MMP_RS03560 0.15 -0.0 666,969 - MMP_RS03560 0.15 -1.8 666,969 - MMP_RS03560 0.15 -1.9 666,970 + MMP_RS03560 0.16 -1.1 666,970 + MMP_RS03560 0.16 -1.2 666,970 + MMP_RS03560 0.16 -2.6 666,971 - MMP_RS03560 0.16 +0.3 666,972 + MMP_RS03560 0.16 -1.9 667,084 - MMP_RS03560 0.23 -2.3 667,085 + MMP_RS03560 0.23 -1.3 667,085 + MMP_RS03560 0.23 -0.1 667,112 - MMP_RS03560 0.25 -2.6 667,115 - MMP_RS03560 0.25 +0.3 667,124 - MMP_RS03560 0.25 +0.9 667,176 - MMP_RS03560 0.29 -1.2 667,226 - MMP_RS03560 0.32 -0.4 667,227 + MMP_RS03560 0.32 +0.5 667,228 - MMP_RS03560 0.32 +0.5 667,229 + MMP_RS03560 0.32 +0.9 667,237 - MMP_RS03560 0.32 -0.1 667,315 - MMP_RS03560 0.37 -0.8 667,321 + MMP_RS03560 0.38 -2.0 667,331 + MMP_RS03560 0.38 -0.5 667,337 - MMP_RS03560 0.39 -2.1 667,346 - MMP_RS03560 0.39 -0.1 667,466 - MMP_RS03560 0.47 +0.2 667,631 + MMP_RS03560 0.57 -0.6 667,662 - MMP_RS03560 0.59 -1.6 667,662 - MMP_RS03560 0.59 +1.2 667,663 + MMP_RS03560 0.59 -0.0 667,663 + MMP_RS03560 0.59 -0.4 667,663 + MMP_RS03560 0.59 -0.2 667,666 - MMP_RS03560 0.60 -0.8 667,666 - MMP_RS03560 0.60 -0.9 667,666 - MMP_RS03560 0.60 +0.1 667,666 - MMP_RS03560 0.60 -1.5 667,667 + MMP_RS03560 0.60 -1.9 667,667 + MMP_RS03560 0.60 -2.0 667,671 - MMP_RS03560 0.60 +0.4 667,671 - MMP_RS03560 0.60 -1.7 667,672 + MMP_RS03560 0.60 -0.8 667,672 + MMP_RS03560 0.60 -1.4 667,787 - MMP_RS03560 0.67 -0.5 667,796 - MMP_RS03560 0.68 +0.2 667,823 + MMP_RS03560 0.70 +0.2 667,824 - MMP_RS03560 0.70 +0.0 667,824 - MMP_RS03560 0.70 -2.3 667,824 - MMP_RS03560 0.70 +0.2 667,825 + MMP_RS03560 0.70 +0.1 668,057 - MMP_RS03560 0.84 -1.0 668,061 + MMP_RS03560 0.85 -0.5 668,121 + MMP_RS03560 0.88 -0.3 668,144 + MMP_RS03560 0.90 -0.3 668,147 - -0.5 668,152 - -1.3 668,173 - -1.7 668,193 + -1.3 668,193 + -0.0 668,229 - -2.6 668,285 - -1.6 668,286 + -0.0 668,289 + -0.6 668,302 - -1.1 668,302 - -2.5 668,307 + -0.2 668,307 + -2.3 668,308 - -0.4 668,309 + +0.4 668,329 + -0.4 668,354 + -0.8 668,354 + -1.9 668,356 + -0.2 668,386 - -2.7 668,386 - +0.9 668,386 - +1.1 668,386 - +0.5 668,386 - -1.2 668,480 - MMP_RS03565 0.12 +1.0 668,480 - MMP_RS03565 0.12 -0.4 668,484 - MMP_RS03565 0.13 +1.8 668,494 - MMP_RS03565 0.15 +3.3 668,591 - MMP_RS03565 0.28 +1.5 668,648 + MMP_RS03565 0.37 -0.5 668,719 + MMP_RS03565 0.47 +2.7 668,729 - MMP_RS03565 0.48 +3.0 668,730 + MMP_RS03565 0.48 -1.0 668,734 - MMP_RS03565 0.49 +2.1 668,842 - MMP_RS03565 0.65 +1.4 668,845 - MMP_RS03565 0.65 -0.0 668,860 - MMP_RS03565 0.67 -2.5 669,032 - -1.1 669,084 + +1.1 669,088 - +0.6 669,114 + +1.3 669,119 + -1.6 669,279 + MMP_RS03570 0.12 +1.6
Or see this region's nucleotide sequence