Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03550

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03545 and MMP_RS03550 are separated by 95 nucleotidesMMP_RS03550 and MMP_RS03555 are separated by 122 nucleotides MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947 _RS03545 MMP_RS03550: MMP_RS03550 - DUF2124 domain-containing protein, at 665,043 to 665,519 _RS03550 MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622 _RS03555 Position (kb) 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 664.239 kb on - strand, within MMP_RS03545at 664.295 kb on + strand, within MMP_RS03545at 664.297 kb on - strand, within MMP_RS03545at 664.552 kb on - strand, within MMP_RS03545at 664.579 kb on - strand, within MMP_RS03545at 664.683 kb on + strand, within MMP_RS03545at 664.726 kb on - strand, within MMP_RS03545at 664.726 kb on - strand, within MMP_RS03545at 664.726 kb on - strand, within MMP_RS03545at 664.728 kb on - strand, within MMP_RS03545at 664.751 kb on - strand, within MMP_RS03545at 664.752 kb on + strand, within MMP_RS03545at 664.809 kb on - strandat 664.855 kb on - strandat 664.859 kb on + strandat 664.942 kb on - strandat 664.953 kb on - strandat 664.982 kb on + strandat 664.984 kb on - strandat 665.278 kb on + strand, within MMP_RS03550at 665.353 kb on - strand, within MMP_RS03550at 665.478 kb on - strandat 665.546 kb on + strandat 665.552 kb on - strandat 665.552 kb on - strandat 665.553 kb on + strandat 665.553 kb on + strandat 665.553 kb on + strandat 665.556 kb on + strandat 665.556 kb on + strandat 665.578 kb on + strandat 665.754 kb on - strand, within MMP_RS03555at 665.785 kb on + strand, within MMP_RS03555at 665.785 kb on + strand, within MMP_RS03555at 665.788 kb on - strand, within MMP_RS03555at 666.107 kb on - strand, within MMP_RS03555at 666.165 kb on - strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.397 kb on - strand, within MMP_RS03555at 666.404 kb on + strand, within MMP_RS03555

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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664,239 - MMP_RS03545 0.49 +1.0
664,295 + MMP_RS03545 0.53 -1.3
664,297 - MMP_RS03545 0.53 +0.3
664,552 - MMP_RS03545 0.72 -0.7
664,579 - MMP_RS03545 0.74 +0.5
664,683 + MMP_RS03545 0.81 -0.9
664,726 - MMP_RS03545 0.84 +0.4
664,726 - MMP_RS03545 0.84 +0.3
664,726 - MMP_RS03545 0.84 -1.5
664,728 - MMP_RS03545 0.84 +1.8
664,751 - MMP_RS03545 0.86 -0.3
664,752 + MMP_RS03545 0.86 -0.2
664,809 - -0.9
664,855 - +1.4
664,859 + +0.7
664,942 - +1.4
664,953 - -0.9
664,982 + +1.8
664,984 - +0.7
665,278 + MMP_RS03550 0.49 -2.9
665,353 - MMP_RS03550 0.65 -0.7
665,478 - +2.9
665,546 + +1.0
665,552 - +1.7
665,552 - -0.5
665,553 + +0.2
665,553 + +1.8
665,553 + -2.4
665,556 + -0.5
665,556 + +0.1
665,578 + +2.0
665,754 - MMP_RS03555 0.11 -0.4
665,785 + MMP_RS03555 0.15 +1.4
665,785 + MMP_RS03555 0.15 +1.2
665,788 - MMP_RS03555 0.15 +0.1
666,107 - MMP_RS03555 0.47 +1.4
666,165 - MMP_RS03555 0.53 +0.3
666,166 + MMP_RS03555 0.53 -0.2
666,166 + MMP_RS03555 0.53 +0.4
666,166 + MMP_RS03555 0.53 +1.0
666,166 + MMP_RS03555 0.53 -0.2
666,397 - MMP_RS03555 0.77 -1.0
666,404 + MMP_RS03555 0.78 +1.4

Or see this region's nucleotide sequence