Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03480 and MMP_RS03485 are separated by 27 nucleotides MMP_RS03485 and MMP_RS03490 are separated by 43 nucleotides MMP_RS03490 and MMP_RS03495 are separated by 62 nucleotides
MMP_RS03480: MMP_RS03480 - SulP family inorganic anion transporter, at 652,337 to 653,956
_RS03480
MMP_RS03485: MMP_RS03485 - TIGR00267 family protein, at 653,984 to 654,544
_RS03485
MMP_RS03490: MMP_RS03490 - DUF2115 domain-containing protein, at 654,588 to 655,076
_RS03490
MMP_RS03495: MMP_RS03495 - Na/Pi cotransporter family protein, at 655,139 to 656,764
_RS03495
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 653.623 kb on + strand, within MMP_RS03480 at 653.660 kb on - strand, within MMP_RS03480 at 653.660 kb on - strand, within MMP_RS03480 at 653.749 kb on + strand, within MMP_RS03480 at 653.899 kb on + strand at 654.035 kb on - strand at 654.164 kb on + strand, within MMP_RS03485 at 654.296 kb on - strand, within MMP_RS03485 at 654.296 kb on - strand, within MMP_RS03485 at 654.297 kb on + strand, within MMP_RS03485 at 654.340 kb on + strand, within MMP_RS03485 at 654.546 kb on - strand at 654.546 kb on - strand at 654.546 kb on - strand at 654.554 kb on + strand at 654.557 kb on - strand at 654.557 kb on - strand at 654.557 kb on - strand at 654.558 kb on + strand at 654.611 kb on - strand at 654.947 kb on - strand, within MMP_RS03490 at 655.089 kb on - strand at 655.094 kb on - strand at 655.140 kb on - strand at 655.234 kb on - strand at 655.395 kb on + strand, within MMP_RS03495 at 655.398 kb on + strand, within MMP_RS03495 at 655.482 kb on + strand, within MMP_RS03495 at 655.528 kb on - strand, within MMP_RS03495 at 655.532 kb on - strand, within MMP_RS03495 at 655.532 kb on - strand, within MMP_RS03495 at 655.533 kb on + strand, within MMP_RS03495 at 655.592 kb on - strand, within MMP_RS03495 at 655.810 kb on - strand, within MMP_RS03495 at 655.824 kb on - strand, within MMP_RS03495 at 655.824 kb on - strand, within MMP_RS03495 at 655.887 kb on + strand, within MMP_RS03495 at 655.906 kb on - strand, within MMP_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 653,623 + MMP_RS03480 0.79 -1.8 653,660 - MMP_RS03480 0.82 +1.8 653,660 - MMP_RS03480 0.82 +1.4 653,749 + MMP_RS03480 0.87 +0.9 653,899 + +0.8 654,035 - -0.4 654,164 + MMP_RS03485 0.32 +0.1 654,296 - MMP_RS03485 0.56 -1.4 654,296 - MMP_RS03485 0.56 +0.4 654,297 + MMP_RS03485 0.56 +1.9 654,340 + MMP_RS03485 0.63 -0.6 654,546 - +1.1 654,546 - +1.3 654,546 - +0.4 654,554 + +0.7 654,557 - +2.7 654,557 - +2.2 654,557 - +0.6 654,558 + -0.5 654,611 - +1.8 654,947 - MMP_RS03490 0.73 -1.5 655,089 - -1.8 655,094 - -0.1 655,140 - +0.7 655,234 - +0.4 655,395 + MMP_RS03495 0.16 +0.3 655,398 + MMP_RS03495 0.16 +0.2 655,482 + MMP_RS03495 0.21 +1.7 655,528 - MMP_RS03495 0.24 -1.1 655,532 - MMP_RS03495 0.24 +0.5 655,532 - MMP_RS03495 0.24 +2.1 655,533 + MMP_RS03495 0.24 +0.6 655,592 - MMP_RS03495 0.28 +0.1 655,810 - MMP_RS03495 0.41 -1.9 655,824 - MMP_RS03495 0.42 +0.2 655,824 - MMP_RS03495 0.42 -0.2 655,887 + MMP_RS03495 0.46 -2.3 655,906 - MMP_RS03495 0.47 +1.9
Or see this region's nucleotide sequence