Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03490

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03480 and MMP_RS03485 are separated by 27 nucleotidesMMP_RS03485 and MMP_RS03490 are separated by 43 nucleotidesMMP_RS03490 and MMP_RS03495 are separated by 62 nucleotides MMP_RS03480: MMP_RS03480 - SulP family inorganic anion transporter, at 652,337 to 653,956 _RS03480 MMP_RS03485: MMP_RS03485 - TIGR00267 family protein, at 653,984 to 654,544 _RS03485 MMP_RS03490: MMP_RS03490 - DUF2115 domain-containing protein, at 654,588 to 655,076 _RS03490 MMP_RS03495: MMP_RS03495 - Na/Pi cotransporter family protein, at 655,139 to 656,764 _RS03495 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2at 653.623 kb on + strand, within MMP_RS03480at 653.660 kb on - strand, within MMP_RS03480at 653.660 kb on - strand, within MMP_RS03480at 653.749 kb on + strand, within MMP_RS03480at 653.899 kb on + strandat 654.035 kb on - strandat 654.164 kb on + strand, within MMP_RS03485at 654.296 kb on - strand, within MMP_RS03485at 654.296 kb on - strand, within MMP_RS03485at 654.297 kb on + strand, within MMP_RS03485at 654.340 kb on + strand, within MMP_RS03485at 654.546 kb on - strandat 654.546 kb on - strandat 654.546 kb on - strandat 654.554 kb on + strandat 654.557 kb on - strandat 654.557 kb on - strandat 654.557 kb on - strandat 654.558 kb on + strandat 654.611 kb on - strandat 654.947 kb on - strand, within MMP_RS03490at 655.089 kb on - strandat 655.094 kb on - strandat 655.140 kb on - strandat 655.234 kb on - strandat 655.395 kb on + strand, within MMP_RS03495at 655.398 kb on + strand, within MMP_RS03495at 655.482 kb on + strand, within MMP_RS03495at 655.528 kb on - strand, within MMP_RS03495at 655.532 kb on - strand, within MMP_RS03495at 655.532 kb on - strand, within MMP_RS03495at 655.533 kb on + strand, within MMP_RS03495at 655.592 kb on - strand, within MMP_RS03495at 655.810 kb on - strand, within MMP_RS03495at 655.824 kb on - strand, within MMP_RS03495at 655.824 kb on - strand, within MMP_RS03495at 655.887 kb on + strand, within MMP_RS03495at 655.906 kb on - strand, within MMP_RS03495

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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653,623 + MMP_RS03480 0.79 -1.8
653,660 - MMP_RS03480 0.82 +1.8
653,660 - MMP_RS03480 0.82 +1.4
653,749 + MMP_RS03480 0.87 +0.9
653,899 + +0.8
654,035 - -0.4
654,164 + MMP_RS03485 0.32 +0.1
654,296 - MMP_RS03485 0.56 -1.4
654,296 - MMP_RS03485 0.56 +0.4
654,297 + MMP_RS03485 0.56 +1.9
654,340 + MMP_RS03485 0.63 -0.6
654,546 - +1.1
654,546 - +1.3
654,546 - +0.4
654,554 + +0.7
654,557 - +2.7
654,557 - +2.2
654,557 - +0.6
654,558 + -0.5
654,611 - +1.8
654,947 - MMP_RS03490 0.73 -1.5
655,089 - -1.8
655,094 - -0.1
655,140 - +0.7
655,234 - +0.4
655,395 + MMP_RS03495 0.16 +0.3
655,398 + MMP_RS03495 0.16 +0.2
655,482 + MMP_RS03495 0.21 +1.7
655,528 - MMP_RS03495 0.24 -1.1
655,532 - MMP_RS03495 0.24 +0.5
655,532 - MMP_RS03495 0.24 +2.1
655,533 + MMP_RS03495 0.24 +0.6
655,592 - MMP_RS03495 0.28 +0.1
655,810 - MMP_RS03495 0.41 -1.9
655,824 - MMP_RS03495 0.42 +0.2
655,824 - MMP_RS03495 0.42 -0.2
655,887 + MMP_RS03495 0.46 -2.3
655,906 - MMP_RS03495 0.47 +1.9

Or see this region's nucleotide sequence