Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03455 and MMP_RS03460 are separated by 91 nucleotides MMP_RS03460 and MMP_RS03465 are separated by 41 nucleotides MMP_RS03465 and MMP_RS03470 are separated by 383 nucleotides
MMP_RS03455: MMP_RS03455 - radical SAM protein, at 648,045 to 648,938
_RS03455
MMP_RS03460: MMP_RS03460 - U32 family peptidase, at 649,030 to 650,241
_RS03460
MMP_RS03465: MMP_RS03465 - adenine phosphoribosyltransferase, at 650,283 to 650,801
_RS03465
MMP_RS03470: MMP_RS03470 - phosphoadenosine phosphosulfate reductase family protein, at 651,185 to 652,060
_RS03470
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 648.086 kb on - strand at 648.087 kb on + strand at 648.117 kb on - strand at 648.186 kb on + strand at 648.261 kb on - strand at 648.262 kb on + strand at 648.262 kb on + strand at 648.508 kb on + strand at 648.718 kb on - strand at 648.902 kb on - strand at 648.903 kb on + strand at 648.905 kb on - strand at 648.927 kb on + strand at 649.014 kb on - strand at 649.019 kb on - strand at 649.032 kb on + strand at 649.042 kb on - strand at 649.043 kb on + strand at 649.043 kb on + strand at 649.050 kb on + strand at 649.116 kb on - strand at 649.173 kb on - strand, within MMP_RS03460 at 649.173 kb on - strand, within MMP_RS03460 at 649.222 kb on + strand, within MMP_RS03460 at 649.252 kb on + strand, within MMP_RS03460 at 649.339 kb on + strand, within MMP_RS03460 at 649.367 kb on - strand, within MMP_RS03460 at 649.405 kb on - strand, within MMP_RS03460 at 649.424 kb on - strand, within MMP_RS03460 at 649.425 kb on + strand, within MMP_RS03460 at 649.485 kb on + strand, within MMP_RS03460 at 649.535 kb on + strand, within MMP_RS03460 at 649.693 kb on + strand, within MMP_RS03460 at 649.696 kb on - strand, within MMP_RS03460 at 649.768 kb on - strand, within MMP_RS03460 at 649.769 kb on + strand, within MMP_RS03460 at 650.187 kb on - strand at 650.311 kb on + strand at 650.325 kb on - strand at 650.369 kb on - strand, within MMP_RS03465 at 650.805 kb on + strand at 650.900 kb on - strand at 650.901 kb on + strand at 650.904 kb on - strand at 650.905 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.919 kb on - strand at 650.922 kb on + strand at 650.925 kb on + strand at 650.930 kb on + strand at 650.960 kb on + strand at 650.978 kb on - strand at 651.003 kb on - strand at 651.003 kb on - strand at 651.003 kb on - strand at 651.004 kb on + strand at 651.042 kb on - strand at 651.102 kb on - strand at 651.139 kb on + strand at 651.147 kb on + strand at 651.163 kb on - strand at 651.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 648,086 - +2.4 648,087 + +0.2 648,117 - +0.2 648,186 + -1.2 648,261 - -0.2 648,262 + +0.0 648,262 + -1.1 648,508 + -0.4 648,718 - +1.5 648,902 - +0.4 648,903 + +1.9 648,905 - -0.5 648,927 + -0.2 649,014 - +0.7 649,019 - +0.6 649,032 + -0.6 649,042 - +0.9 649,043 + -0.9 649,043 + -1.3 649,050 + -3.5 649,116 - -1.6 649,173 - MMP_RS03460 0.12 -0.2 649,173 - MMP_RS03460 0.12 -1.4 649,222 + MMP_RS03460 0.16 +1.0 649,252 + MMP_RS03460 0.18 -1.7 649,339 + MMP_RS03460 0.25 -1.6 649,367 - MMP_RS03460 0.28 -1.0 649,405 - MMP_RS03460 0.31 -3.0 649,424 - MMP_RS03460 0.33 -0.7 649,425 + MMP_RS03460 0.33 +1.6 649,485 + MMP_RS03460 0.38 -1.6 649,535 + MMP_RS03460 0.42 -0.1 649,693 + MMP_RS03460 0.55 +1.0 649,696 - MMP_RS03460 0.55 -1.2 649,768 - MMP_RS03460 0.61 -2.2 649,769 + MMP_RS03460 0.61 -1.5 650,187 - -1.2 650,311 + +0.3 650,325 - +0.0 650,369 - MMP_RS03465 0.17 -1.1 650,805 + -2.6 650,900 - -1.3 650,901 + -1.7 650,904 - +0.0 650,905 + -1.9 650,908 + -1.7 650,908 + -0.1 650,919 - +0.7 650,922 + -2.7 650,925 + -1.0 650,930 + -2.0 650,960 + -0.4 650,978 - -0.6 651,003 - +0.4 651,003 - -0.9 651,003 - -1.2 651,004 + +0.6 651,042 - -0.3 651,102 - -0.5 651,139 + -0.4 651,147 + +0.7 651,163 - -0.7 651,170 - +0.9
Or see this region's nucleotide sequence