Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03460

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03455 and MMP_RS03460 are separated by 91 nucleotidesMMP_RS03460 and MMP_RS03465 are separated by 41 nucleotidesMMP_RS03465 and MMP_RS03470 are separated by 383 nucleotides MMP_RS03455: MMP_RS03455 - radical SAM protein, at 648,045 to 648,938 _RS03455 MMP_RS03460: MMP_RS03460 - U32 family peptidase, at 649,030 to 650,241 _RS03460 MMP_RS03465: MMP_RS03465 - adenine phosphoribosyltransferase, at 650,283 to 650,801 _RS03465 MMP_RS03470: MMP_RS03470 - phosphoadenosine phosphosulfate reductase family protein, at 651,185 to 652,060 _RS03470 Position (kb) 649 650 651Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 648.086 kb on - strandat 648.087 kb on + strandat 648.117 kb on - strandat 648.186 kb on + strandat 648.261 kb on - strandat 648.262 kb on + strandat 648.262 kb on + strandat 648.508 kb on + strandat 648.718 kb on - strandat 648.902 kb on - strandat 648.903 kb on + strandat 648.905 kb on - strandat 648.927 kb on + strandat 649.014 kb on - strandat 649.019 kb on - strandat 649.032 kb on + strandat 649.042 kb on - strandat 649.043 kb on + strandat 649.043 kb on + strandat 649.050 kb on + strandat 649.116 kb on - strandat 649.173 kb on - strand, within MMP_RS03460at 649.173 kb on - strand, within MMP_RS03460at 649.222 kb on + strand, within MMP_RS03460at 649.252 kb on + strand, within MMP_RS03460at 649.339 kb on + strand, within MMP_RS03460at 649.367 kb on - strand, within MMP_RS03460at 649.405 kb on - strand, within MMP_RS03460at 649.424 kb on - strand, within MMP_RS03460at 649.425 kb on + strand, within MMP_RS03460at 649.485 kb on + strand, within MMP_RS03460at 649.535 kb on + strand, within MMP_RS03460at 649.693 kb on + strand, within MMP_RS03460at 649.696 kb on - strand, within MMP_RS03460at 649.768 kb on - strand, within MMP_RS03460at 649.769 kb on + strand, within MMP_RS03460at 650.187 kb on - strandat 650.311 kb on + strandat 650.325 kb on - strandat 650.369 kb on - strand, within MMP_RS03465at 650.805 kb on + strandat 650.900 kb on - strandat 650.901 kb on + strandat 650.904 kb on - strandat 650.905 kb on + strandat 650.908 kb on + strandat 650.908 kb on + strandat 650.919 kb on - strandat 650.922 kb on + strandat 650.925 kb on + strandat 650.930 kb on + strandat 650.960 kb on + strandat 650.978 kb on - strandat 651.003 kb on - strandat 651.003 kb on - strandat 651.003 kb on - strandat 651.004 kb on + strandat 651.042 kb on - strandat 651.102 kb on - strandat 651.139 kb on + strandat 651.147 kb on + strandat 651.163 kb on - strandat 651.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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648,086 - +2.4
648,087 + +0.2
648,117 - +0.2
648,186 + -1.2
648,261 - -0.2
648,262 + +0.0
648,262 + -1.1
648,508 + -0.4
648,718 - +1.5
648,902 - +0.4
648,903 + +1.9
648,905 - -0.5
648,927 + -0.2
649,014 - +0.7
649,019 - +0.6
649,032 + -0.6
649,042 - +0.9
649,043 + -0.9
649,043 + -1.3
649,050 + -3.5
649,116 - -1.6
649,173 - MMP_RS03460 0.12 -0.2
649,173 - MMP_RS03460 0.12 -1.4
649,222 + MMP_RS03460 0.16 +1.0
649,252 + MMP_RS03460 0.18 -1.7
649,339 + MMP_RS03460 0.25 -1.6
649,367 - MMP_RS03460 0.28 -1.0
649,405 - MMP_RS03460 0.31 -3.0
649,424 - MMP_RS03460 0.33 -0.7
649,425 + MMP_RS03460 0.33 +1.6
649,485 + MMP_RS03460 0.38 -1.6
649,535 + MMP_RS03460 0.42 -0.1
649,693 + MMP_RS03460 0.55 +1.0
649,696 - MMP_RS03460 0.55 -1.2
649,768 - MMP_RS03460 0.61 -2.2
649,769 + MMP_RS03460 0.61 -1.5
650,187 - -1.2
650,311 + +0.3
650,325 - +0.0
650,369 - MMP_RS03465 0.17 -1.1
650,805 + -2.6
650,900 - -1.3
650,901 + -1.7
650,904 - +0.0
650,905 + -1.9
650,908 + -1.7
650,908 + -0.1
650,919 - +0.7
650,922 + -2.7
650,925 + -1.0
650,930 + -2.0
650,960 + -0.4
650,978 - -0.6
651,003 - +0.4
651,003 - -0.9
651,003 - -1.2
651,004 + +0.6
651,042 - -0.3
651,102 - -0.5
651,139 + -0.4
651,147 + +0.7
651,163 - -0.7
651,170 - +0.9

Or see this region's nucleotide sequence