Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03310 and MMP_RS08960 are separated by 14 nucleotides MMP_RS08960 and MMP_RS03315 are separated by 114 nucleotides MMP_RS03315 and MMP_RS03320 are separated by 111 nucleotides MMP_RS03320 and MMP_RS03325 are separated by 180 nucleotides
MMP_RS03310: MMP_RS03310 - ferrous iron transport protein B, at 621,322 to 623,265
_RS03310
MMP_RS08960: MMP_RS08960 - hypothetical protein, at 623,280 to 623,417
_RS08960
MMP_RS03315: MMP_RS03315 - ferrous iron transport protein A, at 623,532 to 623,738
_RS03315
MMP_RS03320: MMP_RS03320 - metal-dependent transcriptional regulator, at 623,850 to 624,254
_RS03320
MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601
_RS03325
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 623.036 kb on - strand at 623.247 kb on - strand at 623.421 kb on - strand at 623.462 kb on - strand at 623.473 kb on + strand at 623.497 kb on + strand at 623.504 kb on + strand at 623.517 kb on - strand at 623.693 kb on - strand, within MMP_RS03315 at 623.702 kb on - strand, within MMP_RS03315 at 623.704 kb on - strand, within MMP_RS03315 at 623.755 kb on - strand at 623.755 kb on - strand at 623.756 kb on + strand at 623.822 kb on - strand at 623.823 kb on + strand at 623.823 kb on + strand at 623.824 kb on - strand at 623.826 kb on - strand at 623.826 kb on - strand at 623.826 kb on - strand at 623.826 kb on - strand at 623.826 kb on - strand at 623.826 kb on - strand at 623.827 kb on + strand at 623.828 kb on - strand at 623.828 kb on - strand at 623.828 kb on - strand at 623.887 kb on - strand at 623.897 kb on - strand, within MMP_RS03320 at 623.901 kb on + strand, within MMP_RS03320 at 623.909 kb on - strand, within MMP_RS03320 at 624.012 kb on - strand, within MMP_RS03320 at 624.023 kb on - strand, within MMP_RS03320 at 624.287 kb on - strand at 624.288 kb on + strand at 624.318 kb on + strand at 624.365 kb on - strand at 624.365 kb on - strand at 624.365 kb on - strand at 624.365 kb on - strand at 624.366 kb on + strand at 624.367 kb on - strand at 624.368 kb on + strand at 624.376 kb on - strand at 624.377 kb on + strand at 624.377 kb on + strand at 624.377 kb on + strand at 624.381 kb on + strand at 624.400 kb on - strand at 624.401 kb on + strand at 624.401 kb on + strand at 624.411 kb on - strand at 624.414 kb on - strand at 624.415 kb on + strand at 624.434 kb on - strand at 624.462 kb on + strand at 624.535 kb on - strand at 624.593 kb on + strand, within MMP_RS03325 at 624.593 kb on + strand, within MMP_RS03325 at 624.775 kb on + strand, within MMP_RS03325 at 624.777 kb on + strand, within MMP_RS03325 at 624.915 kb on + strand, within MMP_RS03325 at 624.990 kb on + strand, within MMP_RS03325 at 625.075 kb on - strand, within MMP_RS03325 at 625.099 kb on - strand, within MMP_RS03325
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 623,036 - -1.4 623,247 - +1.0 623,421 - -2.1 623,462 - +1.0 623,473 + +0.4 623,497 + -1.0 623,504 + +0.7 623,517 - -1.0 623,693 - MMP_RS03315 0.78 +2.4 623,702 - MMP_RS03315 0.82 -0.4 623,704 - MMP_RS03315 0.83 +3.1 623,755 - +0.8 623,755 - -1.8 623,756 + +1.4 623,822 - -0.4 623,823 + -0.1 623,823 + +2.9 623,824 - +1.6 623,826 - +0.6 623,826 - -1.0 623,826 - -0.3 623,826 - +2.4 623,826 - -2.0 623,826 - +0.9 623,827 + +1.0 623,828 - +0.4 623,828 - -1.4 623,828 - +0.1 623,887 - -2.8 623,897 - MMP_RS03320 0.12 -1.1 623,901 + MMP_RS03320 0.13 -1.2 623,909 - MMP_RS03320 0.15 -0.5 624,012 - MMP_RS03320 0.40 -2.2 624,023 - MMP_RS03320 0.43 -0.2 624,287 - +2.1 624,288 + +1.9 624,318 + -0.4 624,365 - +2.8 624,365 - -0.3 624,365 - +1.7 624,365 - -0.8 624,366 + +0.8 624,367 - +0.3 624,368 + +1.3 624,376 - +1.1 624,377 + +1.2 624,377 + -0.3 624,377 + +0.5 624,381 + +0.9 624,400 - -0.4 624,401 + +0.3 624,401 + +0.5 624,411 - +1.4 624,414 - +0.4 624,415 + +1.0 624,434 - +1.3 624,462 + -1.1 624,535 - -0.0 624,593 + MMP_RS03325 0.14 +0.3 624,593 + MMP_RS03325 0.14 -2.0 624,775 + MMP_RS03325 0.29 -1.2 624,777 + MMP_RS03325 0.29 -0.6 624,915 + MMP_RS03325 0.41 -0.2 624,990 + MMP_RS03325 0.48 +1.1 625,075 - MMP_RS03325 0.55 -0.5 625,099 - MMP_RS03325 0.57 -0.0
Or see this region's nucleotide sequence