Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03320

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03310 and MMP_RS08960 are separated by 14 nucleotidesMMP_RS08960 and MMP_RS03315 are separated by 114 nucleotidesMMP_RS03315 and MMP_RS03320 are separated by 111 nucleotidesMMP_RS03320 and MMP_RS03325 are separated by 180 nucleotides MMP_RS03310: MMP_RS03310 - ferrous iron transport protein B, at 621,322 to 623,265 _RS03310 MMP_RS08960: MMP_RS08960 - hypothetical protein, at 623,280 to 623,417 _RS08960 MMP_RS03315: MMP_RS03315 - ferrous iron transport protein A, at 623,532 to 623,738 _RS03315 MMP_RS03320: MMP_RS03320 - metal-dependent transcriptional regulator, at 623,850 to 624,254 _RS03320 MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601 _RS03325 Position (kb) 623 624 625Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 623.036 kb on - strandat 623.247 kb on - strandat 623.421 kb on - strandat 623.462 kb on - strandat 623.473 kb on + strandat 623.497 kb on + strandat 623.504 kb on + strandat 623.517 kb on - strandat 623.693 kb on - strand, within MMP_RS03315at 623.702 kb on - strand, within MMP_RS03315at 623.704 kb on - strand, within MMP_RS03315at 623.755 kb on - strandat 623.755 kb on - strandat 623.756 kb on + strandat 623.822 kb on - strandat 623.823 kb on + strandat 623.823 kb on + strandat 623.824 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.827 kb on + strandat 623.828 kb on - strandat 623.828 kb on - strandat 623.828 kb on - strandat 623.887 kb on - strandat 623.897 kb on - strand, within MMP_RS03320at 623.901 kb on + strand, within MMP_RS03320at 623.909 kb on - strand, within MMP_RS03320at 624.012 kb on - strand, within MMP_RS03320at 624.023 kb on - strand, within MMP_RS03320at 624.287 kb on - strandat 624.288 kb on + strandat 624.318 kb on + strandat 624.365 kb on - strandat 624.365 kb on - strandat 624.365 kb on - strandat 624.365 kb on - strandat 624.366 kb on + strandat 624.367 kb on - strandat 624.368 kb on + strandat 624.376 kb on - strandat 624.377 kb on + strandat 624.377 kb on + strandat 624.377 kb on + strandat 624.381 kb on + strandat 624.400 kb on - strandat 624.401 kb on + strandat 624.401 kb on + strandat 624.411 kb on - strandat 624.414 kb on - strandat 624.415 kb on + strandat 624.434 kb on - strandat 624.462 kb on + strandat 624.535 kb on - strandat 624.593 kb on + strand, within MMP_RS03325at 624.593 kb on + strand, within MMP_RS03325at 624.775 kb on + strand, within MMP_RS03325at 624.777 kb on + strand, within MMP_RS03325at 624.915 kb on + strand, within MMP_RS03325at 624.990 kb on + strand, within MMP_RS03325at 625.075 kb on - strand, within MMP_RS03325at 625.099 kb on - strand, within MMP_RS03325

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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623,036 - -1.4
623,247 - +1.0
623,421 - -2.1
623,462 - +1.0
623,473 + +0.4
623,497 + -1.0
623,504 + +0.7
623,517 - -1.0
623,693 - MMP_RS03315 0.78 +2.4
623,702 - MMP_RS03315 0.82 -0.4
623,704 - MMP_RS03315 0.83 +3.1
623,755 - +0.8
623,755 - -1.8
623,756 + +1.4
623,822 - -0.4
623,823 + -0.1
623,823 + +2.9
623,824 - +1.6
623,826 - +0.6
623,826 - -1.0
623,826 - -0.3
623,826 - +2.4
623,826 - -2.0
623,826 - +0.9
623,827 + +1.0
623,828 - +0.4
623,828 - -1.4
623,828 - +0.1
623,887 - -2.8
623,897 - MMP_RS03320 0.12 -1.1
623,901 + MMP_RS03320 0.13 -1.2
623,909 - MMP_RS03320 0.15 -0.5
624,012 - MMP_RS03320 0.40 -2.2
624,023 - MMP_RS03320 0.43 -0.2
624,287 - +2.1
624,288 + +1.9
624,318 + -0.4
624,365 - +2.8
624,365 - -0.3
624,365 - +1.7
624,365 - -0.8
624,366 + +0.8
624,367 - +0.3
624,368 + +1.3
624,376 - +1.1
624,377 + +1.2
624,377 + -0.3
624,377 + +0.5
624,381 + +0.9
624,400 - -0.4
624,401 + +0.3
624,401 + +0.5
624,411 - +1.4
624,414 - +0.4
624,415 + +1.0
624,434 - +1.3
624,462 + -1.1
624,535 - -0.0
624,593 + MMP_RS03325 0.14 +0.3
624,593 + MMP_RS03325 0.14 -2.0
624,775 + MMP_RS03325 0.29 -1.2
624,777 + MMP_RS03325 0.29 -0.6
624,915 + MMP_RS03325 0.41 -0.2
624,990 + MMP_RS03325 0.48 +1.1
625,075 - MMP_RS03325 0.55 -0.5
625,099 - MMP_RS03325 0.57 -0.0

Or see this region's nucleotide sequence