Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03205

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03200 and MMP_RS03205 are separated by 136 nucleotidesMMP_RS03205 and MMP_RS03210 are separated by 147 nucleotides MMP_RS03200: MMP_RS03200 - methanogenesis marker 15 protein, at 603,102 to 604,337 _RS03200 MMP_RS03205: MMP_RS03205 - peptidyl-tRNA hydrolase Pth2, at 604,474 to 604,824 _RS03205 MMP_RS03210: MMP_RS03210 - tRNA guanosine(15) transglycosylase TgtA, at 604,972 to 606,921 _RS03210 Position (kb) 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1at 603.854 kb on - strandat 604.216 kb on - strandat 604.242 kb on + strandat 604.429 kb on - strandat 604.430 kb on + strandat 604.434 kb on - strandat 604.475 kb on - strandat 604.481 kb on + strandat 604.486 kb on - strandat 604.545 kb on - strand, within MMP_RS03205at 604.699 kb on + strand, within MMP_RS03205at 604.821 kb on + strandat 604.876 kb on + strandat 604.879 kb on + strandat 604.880 kb on - strandat 604.881 kb on + strandat 604.881 kb on + strandat 604.885 kb on + strandat 604.885 kb on + strandat 604.885 kb on + strandat 604.885 kb on + strandat 604.916 kb on - strandat 604.961 kb on + strandat 604.961 kb on + strandat 605.147 kb on - strandat 605.270 kb on - strand, within MMP_RS03210at 605.270 kb on - strand, within MMP_RS03210at 605.271 kb on + strand, within MMP_RS03210at 605.457 kb on - strand, within MMP_RS03210at 605.467 kb on + strand, within MMP_RS03210at 605.483 kb on + strand, within MMP_RS03210at 605.555 kb on - strand, within MMP_RS03210at 605.555 kb on - strand, within MMP_RS03210at 605.601 kb on - strand, within MMP_RS03210at 605.749 kb on - strand, within MMP_RS03210at 605.822 kb on - strand, within MMP_RS03210at 605.823 kb on + strand, within MMP_RS03210at 605.823 kb on + strand, within MMP_RS03210at 605.823 kb on + strand, within MMP_RS03210

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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603,854 - -0.4
604,216 - -0.4
604,242 + -1.5
604,429 - -2.5
604,430 + -0.8
604,434 - +1.0
604,475 - -1.7
604,481 + +0.1
604,486 - +0.2
604,545 - MMP_RS03205 0.20 -1.3
604,699 + MMP_RS03205 0.64 -1.4
604,821 + -2.1
604,876 + +0.3
604,879 + -0.5
604,880 - -1.5
604,881 + +0.7
604,881 + -1.4
604,885 + -0.7
604,885 + -0.5
604,885 + -0.7
604,885 + -0.8
604,916 - +0.4
604,961 + -1.9
604,961 + +1.5
605,147 - -2.1
605,270 - MMP_RS03210 0.15 -1.2
605,270 - MMP_RS03210 0.15 -2.9
605,271 + MMP_RS03210 0.15 +0.8
605,457 - MMP_RS03210 0.25 +0.4
605,467 + MMP_RS03210 0.25 -1.9
605,483 + MMP_RS03210 0.26 +0.1
605,555 - MMP_RS03210 0.30 +0.9
605,555 - MMP_RS03210 0.30 -0.8
605,601 - MMP_RS03210 0.32 -0.6
605,749 - MMP_RS03210 0.40 -0.5
605,822 - MMP_RS03210 0.44 +1.1
605,823 + MMP_RS03210 0.44 -0.6
605,823 + MMP_RS03210 0.44 -1.0
605,823 + MMP_RS03210 0.44 -0.7

Or see this region's nucleotide sequence