Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03080

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03075 and MMP_RS03080 are separated by 422 nucleotidesMMP_RS03080 and MMP_RS03085 are separated by 4 nucleotidesMMP_RS03085 and MMP_RS03090 are separated by 25 nucleotides MMP_RS03075: MMP_RS03075 - valine--tRNA ligase, at 579,029 to 581,689 _RS03075 MMP_RS03080: MMP_RS03080 - universal stress protein, at 582,112 to 582,549 _RS03080 MMP_RS03085: MMP_RS03085 - endonuclease III, at 582,554 to 583,252 _RS03085 MMP_RS03090: MMP_RS03090 - cation:proton antiporter, at 583,278 to 584,447 _RS03090 Position (kb) 582 583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 581.269 kb on - strandat 581.272 kb on - strandat 581.274 kb on - strandat 581.786 kb on - strandat 581.786 kb on - strandat 581.786 kb on - strandat 581.795 kb on - strandat 581.871 kb on + strandat 581.923 kb on + strandat 581.938 kb on - strandat 581.959 kb on + strandat 581.963 kb on + strandat 581.963 kb on + strandat 581.975 kb on - strandat 582.008 kb on - strandat 582.059 kb on + strandat 582.059 kb on + strandat 582.064 kb on - strandat 582.064 kb on - strandat 582.066 kb on - strandat 582.066 kb on - strandat 582.067 kb on + strandat 582.068 kb on - strandat 582.069 kb on + strandat 582.080 kb on - strandat 582.359 kb on - strand, within MMP_RS03080at 582.360 kb on + strand, within MMP_RS03080at 582.476 kb on - strand, within MMP_RS03080at 582.477 kb on + strand, within MMP_RS03080at 582.555 kb on - strandat 582.556 kb on + strandat 582.584 kb on - strandat 582.585 kb on + strandat 582.589 kb on + strandat 582.654 kb on + strand, within MMP_RS03085at 582.737 kb on + strand, within MMP_RS03085at 582.740 kb on - strand, within MMP_RS03085at 582.740 kb on - strand, within MMP_RS03085at 582.741 kb on + strand, within MMP_RS03085at 582.755 kb on + strand, within MMP_RS03085at 582.757 kb on + strand, within MMP_RS03085at 582.869 kb on - strand, within MMP_RS03085at 582.921 kb on - strand, within MMP_RS03085at 582.938 kb on + strand, within MMP_RS03085at 583.110 kb on - strand, within MMP_RS03085at 583.365 kb on - strandat 583.396 kb on + strand, within MMP_RS03090

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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581,269 - +0.2
581,272 - +0.1
581,274 - -0.8
581,786 - +0.0
581,786 - -0.4
581,786 - +1.8
581,795 - +1.4
581,871 + +0.7
581,923 + +0.6
581,938 - +0.3
581,959 + -2.1
581,963 + +0.8
581,963 + +1.1
581,975 - +1.8
582,008 - +0.7
582,059 + -1.2
582,059 + -3.3
582,064 - +0.6
582,064 - +0.4
582,066 - +0.3
582,066 - -2.4
582,067 + -2.1
582,068 - -1.3
582,069 + -3.5
582,080 - -1.3
582,359 - MMP_RS03080 0.56 -0.0
582,360 + MMP_RS03080 0.57 -2.0
582,476 - MMP_RS03080 0.83 -1.9
582,477 + MMP_RS03080 0.83 -1.5
582,555 - -0.1
582,556 + +0.3
582,584 - +0.5
582,585 + -0.1
582,589 + +1.5
582,654 + MMP_RS03085 0.14 +1.6
582,737 + MMP_RS03085 0.26 +1.8
582,740 - MMP_RS03085 0.27 +1.4
582,740 - MMP_RS03085 0.27 -0.2
582,741 + MMP_RS03085 0.27 -0.7
582,755 + MMP_RS03085 0.29 +0.7
582,757 + MMP_RS03085 0.29 +1.3
582,869 - MMP_RS03085 0.45 -0.1
582,921 - MMP_RS03085 0.53 +0.2
582,938 + MMP_RS03085 0.55 +1.3
583,110 - MMP_RS03085 0.80 +1.6
583,365 - +0.2
583,396 + MMP_RS03090 0.10 -0.4

Or see this region's nucleotide sequence