Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03075 and MMP_RS03080 are separated by 422 nucleotides MMP_RS03080 and MMP_RS03085 are separated by 4 nucleotides MMP_RS03085 and MMP_RS03090 are separated by 25 nucleotides
MMP_RS03075: MMP_RS03075 - valine--tRNA ligase, at 579,029 to 581,689
_RS03075
MMP_RS03080: MMP_RS03080 - universal stress protein, at 582,112 to 582,549
_RS03080
MMP_RS03085: MMP_RS03085 - endonuclease III, at 582,554 to 583,252
_RS03085
MMP_RS03090: MMP_RS03090 - cation:proton antiporter, at 583,278 to 584,447
_RS03090
Position (kb) 582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 581.269 kb on - strand at 581.272 kb on - strand at 581.274 kb on - strand at 581.786 kb on - strand at 581.786 kb on - strand at 581.786 kb on - strand at 581.795 kb on - strand at 581.871 kb on + strand at 581.923 kb on + strand at 581.938 kb on - strand at 581.959 kb on + strand at 581.963 kb on + strand at 581.963 kb on + strand at 581.975 kb on - strand at 582.008 kb on - strand at 582.059 kb on + strand at 582.059 kb on + strand at 582.064 kb on - strand at 582.064 kb on - strand at 582.066 kb on - strand at 582.066 kb on - strand at 582.067 kb on + strand at 582.068 kb on - strand at 582.069 kb on + strand at 582.080 kb on - strand at 582.359 kb on - strand, within MMP_RS03080 at 582.360 kb on + strand, within MMP_RS03080 at 582.476 kb on - strand, within MMP_RS03080 at 582.477 kb on + strand, within MMP_RS03080 at 582.555 kb on - strand at 582.556 kb on + strand at 582.584 kb on - strand at 582.585 kb on + strand at 582.589 kb on + strand at 582.654 kb on + strand, within MMP_RS03085 at 582.737 kb on + strand, within MMP_RS03085 at 582.740 kb on - strand, within MMP_RS03085 at 582.740 kb on - strand, within MMP_RS03085 at 582.741 kb on + strand, within MMP_RS03085 at 582.755 kb on + strand, within MMP_RS03085 at 582.757 kb on + strand, within MMP_RS03085 at 582.869 kb on - strand, within MMP_RS03085 at 582.921 kb on - strand, within MMP_RS03085 at 582.938 kb on + strand, within MMP_RS03085 at 583.110 kb on - strand, within MMP_RS03085 at 583.365 kb on - strand at 583.396 kb on + strand, within MMP_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 581,269 - +0.2 581,272 - +0.1 581,274 - -0.8 581,786 - +0.0 581,786 - -0.4 581,786 - +1.8 581,795 - +1.4 581,871 + +0.7 581,923 + +0.6 581,938 - +0.3 581,959 + -2.1 581,963 + +0.8 581,963 + +1.1 581,975 - +1.8 582,008 - +0.7 582,059 + -1.2 582,059 + -3.3 582,064 - +0.6 582,064 - +0.4 582,066 - +0.3 582,066 - -2.4 582,067 + -2.1 582,068 - -1.3 582,069 + -3.5 582,080 - -1.3 582,359 - MMP_RS03080 0.56 -0.0 582,360 + MMP_RS03080 0.57 -2.0 582,476 - MMP_RS03080 0.83 -1.9 582,477 + MMP_RS03080 0.83 -1.5 582,555 - -0.1 582,556 + +0.3 582,584 - +0.5 582,585 + -0.1 582,589 + +1.5 582,654 + MMP_RS03085 0.14 +1.6 582,737 + MMP_RS03085 0.26 +1.8 582,740 - MMP_RS03085 0.27 +1.4 582,740 - MMP_RS03085 0.27 -0.2 582,741 + MMP_RS03085 0.27 -0.7 582,755 + MMP_RS03085 0.29 +0.7 582,757 + MMP_RS03085 0.29 +1.3 582,869 - MMP_RS03085 0.45 -0.1 582,921 - MMP_RS03085 0.53 +0.2 582,938 + MMP_RS03085 0.55 +1.3 583,110 - MMP_RS03085 0.80 +1.6 583,365 - +0.2 583,396 + MMP_RS03090 0.10 -0.4
Or see this region's nucleotide sequence