Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02955

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02940 and MMP_RS02945 are separated by 1 nucleotidesMMP_RS02945 and MMP_RS02950 are separated by 9 nucleotidesMMP_RS02950 and MMP_RS02955 are separated by 118 nucleotidesMMP_RS02955 and MMP_RS02960 are separated by 61 nucleotidesMMP_RS02960 and MMP_RS02965 are separated by 13 nucleotides MMP_RS02940: MMP_RS02940 - TatD family hydrolase, at 559,014 to 559,856 _RS02940 MMP_RS02945: MMP_RS02945 - UPF0146 family protein, at 559,858 to 560,271 _RS02945 MMP_RS02950: MMP_RS02950 - hypothetical protein, at 560,281 to 560,577 _RS02950 MMP_RS02955: MMP_RS02955 - DJ-1/PfpI family protein, at 560,696 to 561,211 _RS02955 MMP_RS02960: MMP_RS02960 - class I SAM-dependent methyltransferase family protein, at 561,273 to 562,034 _RS02960 MMP_RS02965: MMP_RS02965 - carboxymuconolactone decarboxylase family protein, at 562,048 to 562,482 _RS02965 Position (kb) 560 561 562Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 559.735 kb on + strand, within MMP_RS02940at 559.877 kb on - strandat 560.125 kb on - strandat 560.131 kb on - strandat 560.250 kb on - strandat 560.252 kb on - strandat 560.253 kb on + strandat 560.282 kb on - strandat 560.604 kb on - strandat 560.616 kb on - strandat 560.627 kb on - strandat 560.636 kb on - strandat 560.647 kb on + strandat 560.651 kb on - strandat 560.659 kb on + strandat 560.659 kb on + strandat 560.659 kb on + strandat 560.660 kb on - strandat 560.660 kb on - strandat 560.660 kb on - strandat 560.660 kb on - strandat 560.661 kb on + strandat 560.661 kb on + strandat 560.661 kb on + strandat 560.661 kb on + strandat 560.661 kb on + strandat 560.661 kb on + strandat 560.707 kb on + strandat 560.757 kb on - strand, within MMP_RS02955at 560.764 kb on + strand, within MMP_RS02955at 560.896 kb on - strand, within MMP_RS02955at 560.897 kb on + strand, within MMP_RS02955at 561.250 kb on - strandat 561.251 kb on + strandat 561.251 kb on + strandat 561.323 kb on - strandat 561.334 kb on - strandat 561.355 kb on + strand, within MMP_RS02960at 561.366 kb on + strand, within MMP_RS02960at 561.398 kb on - strand, within MMP_RS02960at 561.398 kb on - strand, within MMP_RS02960at 561.399 kb on + strand, within MMP_RS02960at 561.399 kb on + strand, within MMP_RS02960at 561.399 kb on + strand, within MMP_RS02960at 561.402 kb on - strand, within MMP_RS02960at 561.402 kb on - strand, within MMP_RS02960at 561.402 kb on - strand, within MMP_RS02960at 561.651 kb on - strand, within MMP_RS02960at 561.835 kb on - strand, within MMP_RS02960at 561.888 kb on + strand, within MMP_RS02960at 561.968 kb on - strandat 561.982 kb on + strandat 562.111 kb on + strand, within MMP_RS02965at 562.111 kb on + strand, within MMP_RS02965at 562.114 kb on + strand, within MMP_RS02965at 562.210 kb on - strand, within MMP_RS02965

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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559,735 + MMP_RS02940 0.86 -1.4
559,877 - +1.6
560,125 - -1.1
560,131 - -1.9
560,250 - -1.1
560,252 - +0.5
560,253 + +0.5
560,282 - +1.3
560,604 - -0.1
560,616 - +1.1
560,627 - -0.2
560,636 - +2.4
560,647 + -0.9
560,651 - +1.2
560,659 + -0.2
560,659 + -1.4
560,659 + +1.6
560,660 - +0.7
560,660 - +0.9
560,660 - +1.0
560,660 - +0.9
560,661 + +1.7
560,661 + -0.7
560,661 + -0.5
560,661 + -0.1
560,661 + -2.8
560,661 + -1.5
560,707 + -0.3
560,757 - MMP_RS02955 0.12 -0.7
560,764 + MMP_RS02955 0.13 -0.3
560,896 - MMP_RS02955 0.39 -0.2
560,897 + MMP_RS02955 0.39 -0.9
561,250 - -2.1
561,251 + -0.9
561,251 + +2.4
561,323 - +2.3
561,334 - +2.7
561,355 + MMP_RS02960 0.11 +0.9
561,366 + MMP_RS02960 0.12 +0.3
561,398 - MMP_RS02960 0.16 +2.6
561,398 - MMP_RS02960 0.16 +0.4
561,399 + MMP_RS02960 0.17 -1.7
561,399 + MMP_RS02960 0.17 +1.2
561,399 + MMP_RS02960 0.17 -0.9
561,402 - MMP_RS02960 0.17 -0.0
561,402 - MMP_RS02960 0.17 +3.0
561,402 - MMP_RS02960 0.17 +1.0
561,651 - MMP_RS02960 0.50 -0.8
561,835 - MMP_RS02960 0.74 +2.2
561,888 + MMP_RS02960 0.81 -1.0
561,968 - -1.4
561,982 + +1.7
562,111 + MMP_RS02965 0.14 +0.9
562,111 + MMP_RS02965 0.14 +1.8
562,114 + MMP_RS02965 0.15 +0.1
562,210 - MMP_RS02965 0.37 +0.8

Or see this region's nucleotide sequence