Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02690

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02685 and MMP_RS02690 are separated by 586 nucleotidesMMP_RS02690 and MMP_RS02695 are separated by 43 nucleotides MMP_RS02685: MMP_RS02685 - molybdate ABC transporter substrate-binding protein, at 510,908 to 511,690 _RS02685 MMP_RS02690: MMP_RS02690 - FmdE family protein, at 512,277 to 512,852 _RS02690 MMP_RS02695: MMP_RS02695 - formylmethanofuran dehydrogenase subunit A, at 512,896 to 514,647 _RS02695 Position (kb) 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.403 kb on + strand, within MMP_RS02685at 511.445 kb on - strand, within MMP_RS02685at 511.446 kb on + strand, within MMP_RS02685at 511.584 kb on - strand, within MMP_RS02685at 511.585 kb on + strand, within MMP_RS02685at 511.593 kb on + strand, within MMP_RS02685at 511.596 kb on + strand, within MMP_RS02685at 511.596 kb on + strand, within MMP_RS02685at 511.781 kb on - strandat 511.782 kb on + strandat 511.782 kb on + strandat 511.785 kb on - strandat 511.989 kb on - strandat 512.139 kb on - strandat 512.140 kb on + strandat 512.191 kb on + strandat 512.194 kb on - strandat 512.194 kb on - strandat 512.195 kb on + strandat 512.250 kb on - strandat 512.251 kb on + strandat 512.262 kb on - strandat 512.263 kb on + strandat 512.275 kb on + strandat 512.275 kb on + strandat 512.275 kb on + strandat 512.282 kb on - strandat 512.344 kb on - strand, within MMP_RS02690at 512.400 kb on + strand, within MMP_RS02690at 512.611 kb on - strand, within MMP_RS02690at 512.634 kb on - strand, within MMP_RS02690at 512.675 kb on + strand, within MMP_RS02690at 512.682 kb on + strand, within MMP_RS02690at 512.724 kb on - strand, within MMP_RS02690at 512.749 kb on - strand, within MMP_RS02690at 512.878 kb on - strandat 512.911 kb on + strandat 512.912 kb on - strandat 512.939 kb on - strandat 512.939 kb on - strandat 512.940 kb on + strandat 512.960 kb on - strandat 513.018 kb on + strandat 513.042 kb on + strandat 513.139 kb on - strand, within MMP_RS02695at 513.371 kb on - strand, within MMP_RS02695at 513.442 kb on + strand, within MMP_RS02695at 513.445 kb on + strand, within MMP_RS02695at 513.832 kb on - strand, within MMP_RS02695

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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511,403 + MMP_RS02685 0.63 -0.4
511,445 - MMP_RS02685 0.69 +0.1
511,446 + MMP_RS02685 0.69 +0.9
511,584 - MMP_RS02685 0.86 +1.1
511,585 + MMP_RS02685 0.86 -1.2
511,593 + MMP_RS02685 0.87 -0.4
511,596 + MMP_RS02685 0.88 -0.1
511,596 + MMP_RS02685 0.88 -0.8
511,781 - +0.8
511,782 + +2.0
511,782 + -1.4
511,785 - -2.5
511,989 - -0.3
512,139 - +1.0
512,140 + -1.0
512,191 + +0.5
512,194 - -1.4
512,194 - +0.2
512,195 + +1.5
512,250 - -0.2
512,251 + -0.9
512,262 - -1.3
512,263 + +2.6
512,275 + -0.4
512,275 + +0.5
512,275 + -2.4
512,282 - +0.2
512,344 - MMP_RS02690 0.12 +0.1
512,400 + MMP_RS02690 0.21 -1.2
512,611 - MMP_RS02690 0.58 -0.5
512,634 - MMP_RS02690 0.62 +1.0
512,675 + MMP_RS02690 0.69 -0.6
512,682 + MMP_RS02690 0.70 -1.5
512,724 - MMP_RS02690 0.78 -0.2
512,749 - MMP_RS02690 0.82 -0.7
512,878 - +2.6
512,911 + +1.3
512,912 - +1.7
512,939 - -1.6
512,939 - +0.7
512,940 + +1.8
512,960 - -1.0
513,018 + +1.5
513,042 + +2.0
513,139 - MMP_RS02695 0.14 -2.9
513,371 - MMP_RS02695 0.27 +0.1
513,442 + MMP_RS02695 0.31 +0.9
513,445 + MMP_RS02695 0.31 -1.1
513,832 - MMP_RS02695 0.53 -2.2

Or see this region's nucleotide sequence