Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02545

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02540 and MMP_RS02545 are separated by 586 nucleotidesMMP_RS02545 and MMP_RS02550 are separated by 249 nucleotidesMMP_RS02550 and MMP_RS02555 are separated by 1 nucleotides MMP_RS02540: MMP_RS02540 - DUF2283 domain-containing protein, at 474,413 to 474,790 _RS02540 MMP_RS02545: MMP_RS02545 - hypothetical protein, at 475,377 to 475,787 _RS02545 MMP_RS02550: MMP_RS02550 - helix-turn-helix transcriptional regulator, at 476,037 to 476,249 _RS02550 MMP_RS02555: MMP_RS02555 - AIPR family protein, at 476,251 to 478,203 _RS02555 Position (kb) 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 474.657 kb on + strand, within MMP_RS02540at 474.714 kb on - strand, within MMP_RS02540at 474.742 kb on + strand, within MMP_RS02540at 474.742 kb on + strand, within MMP_RS02540at 474.746 kb on - strand, within MMP_RS02540at 474.746 kb on - strand, within MMP_RS02540at 474.746 kb on - strand, within MMP_RS02540at 474.747 kb on + strand, within MMP_RS02540at 474.766 kb on + strandat 474.814 kb on - strandat 474.814 kb on - strandat 474.839 kb on - strandat 474.840 kb on + strandat 474.841 kb on - strandat 474.841 kb on - strandat 474.846 kb on - strandat 474.847 kb on + strandat 474.847 kb on + strandat 474.852 kb on + strandat 474.880 kb on + strandat 474.883 kb on - strandat 474.900 kb on + strandat 475.037 kb on - strandat 475.271 kb on - strandat 475.350 kb on - strandat 475.413 kb on + strandat 475.414 kb on - strandat 475.415 kb on + strandat 475.459 kb on + strand, within MMP_RS02545at 475.480 kb on + strand, within MMP_RS02545at 475.504 kb on + strand, within MMP_RS02545at 475.548 kb on - strand, within MMP_RS02545at 475.605 kb on + strand, within MMP_RS02545at 475.710 kb on - strand, within MMP_RS02545at 475.724 kb on + strand, within MMP_RS02545at 475.800 kb on - strandat 475.847 kb on - strandat 475.847 kb on - strandat 475.847 kb on - strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.849 kb on - strandat 475.849 kb on - strandat 475.850 kb on + strandat 475.853 kb on - strandat 475.853 kb on - strandat 475.853 kb on - strandat 475.854 kb on + strandat 475.854 kb on + strandat 475.855 kb on - strandat 475.856 kb on + strandat 475.917 kb on - strandat 475.917 kb on - strandat 475.928 kb on + strandat 475.937 kb on - strandat 475.938 kb on + strandat 475.942 kb on + strandat 475.951 kb on + strandat 476.012 kb on + strandat 476.040 kb on - strandat 476.099 kb on + strand, within MMP_RS02550at 476.116 kb on + strand, within MMP_RS02550at 476.127 kb on - strand, within MMP_RS02550at 476.129 kb on - strand, within MMP_RS02550at 476.170 kb on + strand, within MMP_RS02550at 476.170 kb on + strand, within MMP_RS02550at 476.179 kb on - strand, within MMP_RS02550at 476.253 kb on + strandat 476.255 kb on + strandat 476.290 kb on + strandat 476.314 kb on + strandat 476.337 kb on - strandat 476.377 kb on - strandat 476.408 kb on - strandat 476.409 kb on + strandat 476.445 kb on - strandat 476.446 kb on + strandat 476.453 kb on + strand, within MMP_RS02555at 476.477 kb on - strand, within MMP_RS02555at 476.478 kb on + strand, within MMP_RS02555at 476.478 kb on + strand, within MMP_RS02555at 476.478 kb on + strand, within MMP_RS02555at 476.479 kb on - strand, within MMP_RS02555at 476.510 kb on + strand, within MMP_RS02555at 476.529 kb on - strand, within MMP_RS02555at 476.562 kb on + strand, within MMP_RS02555at 476.620 kb on + strand, within MMP_RS02555at 476.648 kb on + strand, within MMP_RS02555at 476.652 kb on - strand, within MMP_RS02555at 476.685 kb on - strand, within MMP_RS02555at 476.711 kb on + strand, within MMP_RS02555at 476.714 kb on + strand, within MMP_RS02555at 476.773 kb on - strand, within MMP_RS02555

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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474,657 + MMP_RS02540 0.65 -1.5
474,714 - MMP_RS02540 0.80 +1.8
474,742 + MMP_RS02540 0.87 +1.4
474,742 + MMP_RS02540 0.87 -0.8
474,746 - MMP_RS02540 0.88 +1.0
474,746 - MMP_RS02540 0.88 -0.0
474,746 - MMP_RS02540 0.88 -1.3
474,747 + MMP_RS02540 0.88 -0.7
474,766 + +0.9
474,814 - -1.9
474,814 - +1.0
474,839 - +1.3
474,840 + +2.1
474,841 - +2.3
474,841 - -3.6
474,846 - +1.8
474,847 + +0.2
474,847 + +0.2
474,852 + +0.7
474,880 + +0.3
474,883 - -2.3
474,900 + +0.2
475,037 - -0.3
475,271 - -1.1
475,350 - -3.2
475,413 + +1.1
475,414 - +2.4
475,415 + +1.8
475,459 + MMP_RS02545 0.20 -2.3
475,480 + MMP_RS02545 0.25 -0.2
475,504 + MMP_RS02545 0.31 +0.9
475,548 - MMP_RS02545 0.42 -3.2
475,605 + MMP_RS02545 0.55 -0.0
475,710 - MMP_RS02545 0.81 -1.3
475,724 + MMP_RS02545 0.84 -1.1
475,800 - -1.0
475,847 - -1.4
475,847 - -1.4
475,847 - +0.3
475,848 + +0.1
475,848 + -0.8
475,848 + -0.8
475,849 - +2.4
475,849 - -2.2
475,850 + +0.7
475,853 - -1.3
475,853 - +0.3
475,853 - -2.3
475,854 + -0.7
475,854 + +0.8
475,855 - +2.1
475,856 + -2.2
475,917 - +2.3
475,917 - -0.4
475,928 + +1.5
475,937 - -1.9
475,938 + +4.7
475,942 + -1.4
475,951 + +1.1
476,012 + +0.1
476,040 - -1.8
476,099 + MMP_RS02550 0.29 +2.3
476,116 + MMP_RS02550 0.37 +0.6
476,127 - MMP_RS02550 0.42 +0.6
476,129 - MMP_RS02550 0.43 -1.1
476,170 + MMP_RS02550 0.62 -1.4
476,170 + MMP_RS02550 0.62 +0.5
476,179 - MMP_RS02550 0.67 -0.0
476,253 + +2.2
476,255 + +1.7
476,290 + -0.5
476,314 + -1.7
476,337 - -0.1
476,377 - +1.6
476,408 - -0.3
476,409 + -1.4
476,445 - +0.5
476,446 + +1.5
476,453 + MMP_RS02555 0.10 +0.8
476,477 - MMP_RS02555 0.12 +0.8
476,478 + MMP_RS02555 0.12 -0.7
476,478 + MMP_RS02555 0.12 +0.0
476,478 + MMP_RS02555 0.12 +0.6
476,479 - MMP_RS02555 0.12 +0.6
476,510 + MMP_RS02555 0.13 +1.0
476,529 - MMP_RS02555 0.14 -2.4
476,562 + MMP_RS02555 0.16 -1.2
476,620 + MMP_RS02555 0.19 -0.3
476,648 + MMP_RS02555 0.20 +0.5
476,652 - MMP_RS02555 0.21 -0.5
476,685 - MMP_RS02555 0.22 -0.4
476,711 + MMP_RS02555 0.24 -1.0
476,714 + MMP_RS02555 0.24 +1.0
476,773 - MMP_RS02555 0.27 -3.0

Or see this region's nucleotide sequence