Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02175

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02165 and MMP_RS02170 are separated by 14 nucleotidesMMP_RS02170 and MMP_RS02175 are separated by 158 nucleotidesMMP_RS02175 and MMP_RS02180 are separated by 19 nucleotides MMP_RS02165: MMP_RS02165 - tRNA-dihydrouridine synthase, at 405,344 to 406,114 _RS02165 MMP_RS02170: MMP_RS02170 - CBS domain-containing protein, at 406,129 to 406,542 _RS02170 MMP_RS02175: MMP_RS02175 - DUF1611 domain-containing protein, at 406,701 to 407,621 _RS02175 MMP_RS02180: MMP_RS02180 - GMC oxidoreductase, at 407,641 to 408,801 _RS02180 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 405.842 kb on + strand, within MMP_RS02165at 405.910 kb on - strand, within MMP_RS02165at 405.910 kb on - strand, within MMP_RS02165at 405.910 kb on - strand, within MMP_RS02165at 405.911 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.913 kb on + strand, within MMP_RS02165at 405.949 kb on + strand, within MMP_RS02165at 406.078 kb on + strandat 406.087 kb on - strandat 406.087 kb on - strandat 406.088 kb on + strandat 406.117 kb on + strandat 406.117 kb on + strandat 406.117 kb on + strandat 406.121 kb on - strandat 406.130 kb on - strandat 406.135 kb on - strandat 406.200 kb on - strand, within MMP_RS02170at 406.220 kb on + strand, within MMP_RS02170at 406.354 kb on - strand, within MMP_RS02170at 406.354 kb on - strand, within MMP_RS02170at 406.509 kb on - strandat 406.562 kb on - strandat 406.566 kb on + strandat 406.592 kb on + strandat 406.602 kb on + strandat 406.626 kb on - strandat 406.770 kb on + strandat 406.772 kb on + strandat 406.772 kb on + strandat 407.408 kb on + strand, within MMP_RS02175at 407.638 kb on + strandat 407.741 kb on - strandat 407.741 kb on - strandat 407.838 kb on - strandat 407.989 kb on - strandat 407.989 kb on - strandat 407.990 kb on + strandat 408.030 kb on - strandat 408.037 kb on - strandat 408.184 kb on + strandat 408.218 kb on + strandat 408.233 kb on + strandat 408.556 kb on - strandat 408.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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405,842 + MMP_RS02165 0.65 +0.7
405,910 - MMP_RS02165 0.73 -0.3
405,910 - MMP_RS02165 0.73 -2.5
405,910 - MMP_RS02165 0.73 -0.9
405,911 + MMP_RS02165 0.74 +0.5
405,913 + MMP_RS02165 0.74 -2.0
405,913 + MMP_RS02165 0.74 -0.5
405,913 + MMP_RS02165 0.74 -0.7
405,913 + MMP_RS02165 0.74 -0.2
405,913 + MMP_RS02165 0.74 -0.5
405,913 + MMP_RS02165 0.74 -0.1
405,949 + MMP_RS02165 0.78 -0.2
406,078 + +0.2
406,087 - -2.2
406,087 - +0.3
406,088 + -0.2
406,117 + +0.0
406,117 + -1.5
406,117 + -0.7
406,121 - +1.9
406,130 - +2.7
406,135 - -2.4
406,200 - MMP_RS02170 0.17 -0.2
406,220 + MMP_RS02170 0.22 +0.5
406,354 - MMP_RS02170 0.54 +1.0
406,354 - MMP_RS02170 0.54 +0.9
406,509 - -0.7
406,562 - +0.9
406,566 + +0.1
406,592 + -0.3
406,602 + -3.5
406,626 - -1.2
406,770 + -0.1
406,772 + +0.4
406,772 + +2.4
407,408 + MMP_RS02175 0.77 -2.7
407,638 + -0.7
407,741 - -0.9
407,741 - -1.7
407,838 - +0.5
407,989 - -2.4
407,989 - -0.5
407,990 + -0.9
408,030 - -0.9
408,037 - -1.4
408,184 + +1.1
408,218 + -2.1
408,233 + -1.4
408,556 - +0.2
408,557 + -0.6

Or see this region's nucleotide sequence