Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02145

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02140 and MMP_RS02145 are separated by 69 nucleotidesMMP_RS02145 and MMP_RS02150 are separated by 301 nucleotides MMP_RS02140: MMP_RS02140 - methionine synthase, at 399,758 to 400,696 _RS02140 MMP_RS02145: MMP_RS02145 - winged helix-turn-helix transcriptional regulator, at 400,766 to 402,076 _RS02145 MMP_RS02150: MMP_RS02150 - hypothetical protein, at 402,378 to 403,463 _RS02150 Position (kb) 400 401 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 399.789 kb on - strandat 399.850 kb on - strandat 399.948 kb on - strandat 400.297 kb on - strandat 400.390 kb on - strandat 400.707 kb on + strandat 400.735 kb on - strandat 400.739 kb on - strandat 400.753 kb on + strandat 400.778 kb on + strandat 400.898 kb on - strand, within MMP_RS02145at 400.906 kb on - strand, within MMP_RS02145at 400.907 kb on + strand, within MMP_RS02145at 400.912 kb on - strand, within MMP_RS02145at 400.913 kb on + strand, within MMP_RS02145at 401.009 kb on + strand, within MMP_RS02145at 401.106 kb on - strand, within MMP_RS02145at 401.107 kb on + strand, within MMP_RS02145at 401.108 kb on - strand, within MMP_RS02145at 401.109 kb on + strand, within MMP_RS02145at 401.109 kb on + strand, within MMP_RS02145at 401.109 kb on + strand, within MMP_RS02145at 401.111 kb on + strand, within MMP_RS02145at 401.113 kb on - strand, within MMP_RS02145at 401.115 kb on - strand, within MMP_RS02145at 401.116 kb on + strand, within MMP_RS02145at 401.176 kb on + strand, within MMP_RS02145at 401.213 kb on + strand, within MMP_RS02145at 401.221 kb on - strand, within MMP_RS02145at 401.221 kb on - strand, within MMP_RS02145at 401.254 kb on + strand, within MMP_RS02145at 401.300 kb on + strand, within MMP_RS02145at 401.310 kb on + strand, within MMP_RS02145at 401.326 kb on + strand, within MMP_RS02145at 401.434 kb on - strand, within MMP_RS02145at 401.527 kb on - strand, within MMP_RS02145at 401.568 kb on - strand, within MMP_RS02145at 401.584 kb on + strand, within MMP_RS02145at 401.629 kb on + strand, within MMP_RS02145at 401.672 kb on + strand, within MMP_RS02145at 401.675 kb on + strand, within MMP_RS02145at 401.680 kb on + strand, within MMP_RS02145at 401.692 kb on + strand, within MMP_RS02145at 401.869 kb on + strand, within MMP_RS02145at 402.060 kb on - strandat 402.060 kb on - strandat 402.092 kb on + strandat 402.112 kb on + strandat 402.127 kb on - strandat 402.132 kb on - strandat 402.132 kb on - strandat 402.132 kb on - strandat 402.132 kb on - strandat 402.132 kb on - strandat 402.133 kb on + strandat 402.133 kb on + strandat 402.133 kb on + strandat 402.133 kb on + strandat 402.133 kb on + strandat 402.133 kb on + strandat 402.135 kb on + strandat 402.148 kb on - strandat 402.148 kb on - strandat 402.194 kb on + strandat 402.198 kb on - strandat 402.230 kb on + strandat 402.246 kb on + strandat 402.250 kb on - strandat 402.250 kb on - strandat 402.251 kb on + strandat 402.251 kb on + strandat 402.389 kb on - strandat 402.395 kb on - strandat 402.861 kb on - strandat 402.862 kb on + strandat 402.864 kb on + strandat 402.876 kb on - strandat 402.908 kb on - strandat 402.935 kb on + strandat 402.935 kb on + strandat 402.971 kb on + strandat 402.971 kb on + strandat 403.071 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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399,789 - -0.1
399,850 - -0.3
399,948 - -0.5
400,297 - +0.5
400,390 - -0.2
400,707 + +1.5
400,735 - -1.4
400,739 - +0.8
400,753 + -0.3
400,778 + -0.9
400,898 - MMP_RS02145 0.10 -1.9
400,906 - MMP_RS02145 0.11 -1.0
400,907 + MMP_RS02145 0.11 -1.6
400,912 - MMP_RS02145 0.11 -0.1
400,913 + MMP_RS02145 0.11 -0.9
401,009 + MMP_RS02145 0.19 -0.1
401,106 - MMP_RS02145 0.26 +0.5
401,107 + MMP_RS02145 0.26 +0.9
401,108 - MMP_RS02145 0.26 -1.6
401,109 + MMP_RS02145 0.26 -2.1
401,109 + MMP_RS02145 0.26 -0.2
401,109 + MMP_RS02145 0.26 -1.0
401,111 + MMP_RS02145 0.26 -0.2
401,113 - MMP_RS02145 0.26 -0.9
401,115 - MMP_RS02145 0.27 -2.5
401,116 + MMP_RS02145 0.27 -2.3
401,176 + MMP_RS02145 0.31 -0.7
401,213 + MMP_RS02145 0.34 +0.1
401,221 - MMP_RS02145 0.35 -2.2
401,221 - MMP_RS02145 0.35 -0.9
401,254 + MMP_RS02145 0.37 -1.0
401,300 + MMP_RS02145 0.41 +0.8
401,310 + MMP_RS02145 0.41 -0.3
401,326 + MMP_RS02145 0.43 -2.0
401,434 - MMP_RS02145 0.51 -1.6
401,527 - MMP_RS02145 0.58 -0.6
401,568 - MMP_RS02145 0.61 -1.1
401,584 + MMP_RS02145 0.62 -0.7
401,629 + MMP_RS02145 0.66 +3.2
401,672 + MMP_RS02145 0.69 -1.1
401,675 + MMP_RS02145 0.69 +0.1
401,680 + MMP_RS02145 0.70 +0.0
401,692 + MMP_RS02145 0.71 +1.5
401,869 + MMP_RS02145 0.84 -0.8
402,060 - +0.9
402,060 - -1.5
402,092 + +2.5
402,112 + -2.4
402,127 - +1.7
402,132 - +0.6
402,132 - -0.5
402,132 - +1.3
402,132 - +0.2
402,132 - +0.5
402,133 + -1.6
402,133 + +0.2
402,133 + +1.0
402,133 + -2.9
402,133 + -0.0
402,133 + -2.1
402,135 + +0.7
402,148 - +1.1
402,148 - +0.8
402,194 + -3.0
402,198 - -0.1
402,230 + +3.3
402,246 + +1.9
402,250 - +0.1
402,250 - +0.5
402,251 + +0.9
402,251 + -3.3
402,389 - -1.5
402,395 - -0.3
402,861 - +1.0
402,862 + -1.5
402,864 + -0.7
402,876 - -1.1
402,908 - -0.8
402,935 + +2.5
402,935 + -1.4
402,971 + -0.8
402,971 + -0.3
403,071 - -1.6

Or see this region's nucleotide sequence