Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01315

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01305 and MMP_RS01310 overlap by 20 nucleotidesMMP_RS01310 and MMP_RS01315 are separated by 3 nucleotidesMMP_RS01315 and MMP_RS01320 are separated by 1 nucleotidesMMP_RS01320 and MMP_RS01325 are separated by 12 nucleotidesMMP_RS01325 and MMP_RS01330 overlap by 8 nucleotides MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789 _RS01305 MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333 _RS01310 MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100 _RS01315 MMP_RS01320: MMP_RS01320 - hypothetical protein, at 248,102 to 248,371 _RS01320 MMP_RS01325: MMP_RS01325 - dihydroneopterin aldolase family protein, at 248,384 to 248,758 _RS01325 MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767 _RS01330 Position (kb) 246 247 248 249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 245.339 kb on - strand, within MMP_RS01305at 245.435 kb on - strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.509 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.561 kb on + strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.622 kb on + strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.701 kb on - strand, within MMP_RS01305at 245.706 kb on + strandat 245.706 kb on + strandat 245.710 kb on + strandat 245.720 kb on - strandat 245.754 kb on - strandat 245.754 kb on - strandat 245.761 kb on - strandat 245.822 kb on - strandat 245.822 kb on - strandat 245.823 kb on + strandat 245.861 kb on + strand, within MMP_RS01310at 245.893 kb on - strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.901 kb on - strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.905 kb on + strand, within MMP_RS01310at 245.906 kb on - strand, within MMP_RS01310at 245.907 kb on + strand, within MMP_RS01310at 245.929 kb on + strand, within MMP_RS01310at 245.933 kb on - strand, within MMP_RS01310at 245.934 kb on + strand, within MMP_RS01310at 245.945 kb on - strand, within MMP_RS01310at 245.946 kb on + strand, within MMP_RS01310at 245.971 kb on + strand, within MMP_RS01310at 245.991 kb on - strand, within MMP_RS01310at 245.998 kb on + strand, within MMP_RS01310at 246.052 kb on + strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.056 kb on + strand, within MMP_RS01310at 246.060 kb on + strand, within MMP_RS01310at 246.124 kb on + strand, within MMP_RS01310at 246.136 kb on + strand, within MMP_RS01310at 246.157 kb on - strand, within MMP_RS01310at 246.233 kb on + strand, within MMP_RS01310at 246.281 kb on + strandat 246.300 kb on - strandat 246.314 kb on - strandat 246.314 kb on - strandat 246.359 kb on - strandat 246.403 kb on + strandat 246.403 kb on + strandat 246.403 kb on + strandat 246.410 kb on - strandat 246.411 kb on + strandat 246.416 kb on - strandat 246.517 kb on + strand, within MMP_RS01315at 246.520 kb on + strand, within MMP_RS01315at 246.527 kb on - strand, within MMP_RS01315at 246.566 kb on + strand, within MMP_RS01315at 246.604 kb on - strand, within MMP_RS01315at 246.643 kb on + strand, within MMP_RS01315at 246.644 kb on - strand, within MMP_RS01315at 246.702 kb on - strand, within MMP_RS01315at 246.703 kb on + strand, within MMP_RS01315at 246.720 kb on - strand, within MMP_RS01315at 246.720 kb on - strand, within MMP_RS01315at 246.736 kb on - strand, within MMP_RS01315at 246.743 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.752 kb on + strand, within MMP_RS01315at 246.752 kb on + strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.772 kb on - strand, within MMP_RS01315at 246.772 kb on - strand, within MMP_RS01315at 246.823 kb on + strand, within MMP_RS01315at 246.824 kb on - strand, within MMP_RS01315at 246.824 kb on - strand, within MMP_RS01315at 246.825 kb on + strand, within MMP_RS01315at 246.842 kb on - strand, within MMP_RS01315at 246.942 kb on - strand, within MMP_RS01315at 246.946 kb on + strand, within MMP_RS01315at 247.130 kb on - strand, within MMP_RS01315at 247.193 kb on - strand, within MMP_RS01315at 247.193 kb on - strand, within MMP_RS01315at 247.233 kb on + strand, within MMP_RS01315at 247.235 kb on - strand, within MMP_RS01315at 247.246 kb on - strand, within MMP_RS01315at 247.283 kb on - strand, within MMP_RS01315at 247.307 kb on + strand, within MMP_RS01315at 247.311 kb on - strand, within MMP_RS01315at 247.337 kb on + strand, within MMP_RS01315at 247.337 kb on + strand, within MMP_RS01315at 247.365 kb on - strand, within MMP_RS01315at 247.365 kb on - strand, within MMP_RS01315at 247.431 kb on - strand, within MMP_RS01315at 247.431 kb on - strand, within MMP_RS01315at 247.431 kb on - strand, within MMP_RS01315at 247.432 kb on + strand, within MMP_RS01315at 247.432 kb on + strand, within MMP_RS01315at 247.432 kb on + strand, within MMP_RS01315at 247.432 kb on + strand, within MMP_RS01315at 247.435 kb on - strand, within MMP_RS01315at 247.436 kb on + strand, within MMP_RS01315at 247.436 kb on + strand, within MMP_RS01315at 247.460 kb on + strand, within MMP_RS01315at 247.483 kb on - strand, within MMP_RS01315at 247.486 kb on + strand, within MMP_RS01315at 247.654 kb on - strand, within MMP_RS01315at 247.655 kb on + strand, within MMP_RS01315at 247.757 kb on - strand, within MMP_RS01315at 247.782 kb on - strand, within MMP_RS01315at 247.786 kb on - strand, within MMP_RS01315at 247.786 kb on - strand, within MMP_RS01315at 247.790 kb on - strand, within MMP_RS01315at 247.791 kb on + strand, within MMP_RS01315at 247.816 kb on - strand, within MMP_RS01315at 247.819 kb on - strand, within MMP_RS01315at 247.819 kb on - strand, within MMP_RS01315at 247.820 kb on + strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.852 kb on - strand, within MMP_RS01315at 247.852 kb on - strand, within MMP_RS01315at 247.852 kb on - strand, within MMP_RS01315at 247.853 kb on + strand, within MMP_RS01315at 247.904 kb on - strand, within MMP_RS01315at 247.905 kb on + strand, within MMP_RS01315at 247.908 kb on - strand, within MMP_RS01315at 247.909 kb on + strand, within MMP_RS01315at 247.925 kb on + strandat 247.927 kb on - strandat 247.927 kb on - strandat 247.929 kb on - strandat 247.929 kb on - strandat 247.929 kb on - strandat 247.930 kb on + strandat 247.931 kb on - strandat 247.931 kb on - strandat 247.931 kb on - strandat 247.932 kb on + strandat 247.932 kb on + strandat 247.992 kb on - strandat 248.018 kb on - strandat 248.047 kb on - strandat 248.081 kb on - strandat 248.143 kb on - strand, within MMP_RS01320at 248.218 kb on - strand, within MMP_RS01320at 248.259 kb on + strand, within MMP_RS01320at 248.261 kb on - strand, within MMP_RS01320at 248.272 kb on - strand, within MMP_RS01320at 248.303 kb on - strand, within MMP_RS01320at 248.371 kb on - strandat 248.400 kb on - strandat 248.400 kb on - strandat 248.405 kb on - strandat 248.435 kb on - strand, within MMP_RS01325at 248.469 kb on + strand, within MMP_RS01325at 248.480 kb on - strand, within MMP_RS01325at 248.486 kb on - strand, within MMP_RS01325at 248.793 kb on + strandat 248.973 kb on - strand, within MMP_RS01330at 248.987 kb on - strand, within MMP_RS01330at 249.032 kb on - strand, within MMP_RS01330at 249.033 kb on + strand, within MMP_RS01330at 249.036 kb on - strand, within MMP_RS01330at 249.036 kb on - strand, within MMP_RS01330at 249.090 kb on + strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.095 kb on + strand, within MMP_RS01330at 249.095 kb on + strand, within MMP_RS01330at 249.098 kb on - strand, within MMP_RS01330

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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245,339 - MMP_RS01305 0.47 -2.2
245,435 - MMP_RS01305 0.59 -1.4
245,436 + MMP_RS01305 0.59 +0.1
245,436 + MMP_RS01305 0.59 +0.1
245,436 + MMP_RS01305 0.59 -0.5
245,436 + MMP_RS01305 0.59 -1.8
245,509 - MMP_RS01305 0.67 -0.7
245,560 - MMP_RS01305 0.73 +0.9
245,560 - MMP_RS01305 0.73 +1.1
245,561 + MMP_RS01305 0.73 +0.3
245,621 - MMP_RS01305 0.80 +0.2
245,621 - MMP_RS01305 0.80 -0.6
245,621 - MMP_RS01305 0.80 +1.4
245,621 - MMP_RS01305 0.80 +0.7
245,622 + MMP_RS01305 0.80 -0.4
245,625 - MMP_RS01305 0.81 -1.7
245,625 - MMP_RS01305 0.81 -1.1
245,626 + MMP_RS01305 0.81 -1.4
245,626 + MMP_RS01305 0.81 -1.8
245,626 + MMP_RS01305 0.81 -0.1
245,626 + MMP_RS01305 0.81 -1.8
245,701 - MMP_RS01305 0.90 +0.9
245,706 + +1.3
245,706 + +0.2
245,710 + +0.6
245,720 - -1.4
245,754 - -1.1
245,754 - +0.2
245,761 - -1.8
245,822 - -0.8
245,822 - -0.9
245,823 + +1.4
245,861 + MMP_RS01310 0.16 +0.4
245,893 - MMP_RS01310 0.22 -0.0
245,894 + MMP_RS01310 0.22 +0.2
245,894 + MMP_RS01310 0.22 +0.6
245,901 - MMP_RS01310 0.23 +0.2
245,902 + MMP_RS01310 0.23 -0.4
245,902 + MMP_RS01310 0.23 +0.7
245,905 + MMP_RS01310 0.24 +0.8
245,906 - MMP_RS01310 0.24 -1.3
245,907 + MMP_RS01310 0.24 +0.7
245,929 + MMP_RS01310 0.28 -0.4
245,933 - MMP_RS01310 0.29 +0.9
245,934 + MMP_RS01310 0.29 -1.0
245,945 - MMP_RS01310 0.31 -0.4
245,946 + MMP_RS01310 0.31 -0.8
245,971 + MMP_RS01310 0.36 -0.1
245,991 - MMP_RS01310 0.39 -0.3
245,998 + MMP_RS01310 0.40 +1.0
246,052 + MMP_RS01310 0.50 -2.8
246,055 - MMP_RS01310 0.51 +0.3
246,055 - MMP_RS01310 0.51 -0.9
246,055 - MMP_RS01310 0.51 -0.2
246,056 + MMP_RS01310 0.51 -0.7
246,060 + MMP_RS01310 0.51 -2.4
246,124 + MMP_RS01310 0.63 +0.3
246,136 + MMP_RS01310 0.65 -2.7
246,157 - MMP_RS01310 0.69 -2.0
246,233 + MMP_RS01310 0.82 +1.2
246,281 + +0.9
246,300 - -1.9
246,314 - -1.7
246,314 - -1.4
246,359 - -0.4
246,403 + -0.3
246,403 + -0.9
246,403 + -0.6
246,410 - +1.0
246,411 + -1.0
246,416 - -0.6
246,517 + MMP_RS01315 0.10 -1.7
246,520 + MMP_RS01315 0.10 -0.3
246,527 - MMP_RS01315 0.11 -1.4
246,566 + MMP_RS01315 0.13 -2.6
246,604 - MMP_RS01315 0.15 -1.5
246,643 + MMP_RS01315 0.17 -0.8
246,644 - MMP_RS01315 0.17 -1.3
246,702 - MMP_RS01315 0.21 -1.3
246,703 + MMP_RS01315 0.21 -1.2
246,720 - MMP_RS01315 0.22 -0.6
246,720 - MMP_RS01315 0.22 -1.9
246,736 - MMP_RS01315 0.23 -1.7
246,743 - MMP_RS01315 0.23 +0.8
246,751 - MMP_RS01315 0.23 -1.0
246,751 - MMP_RS01315 0.23 -2.7
246,751 - MMP_RS01315 0.23 -0.5
246,752 + MMP_RS01315 0.24 -0.5
246,752 + MMP_RS01315 0.24 +0.1
246,770 - MMP_RS01315 0.25 +0.7
246,770 - MMP_RS01315 0.25 -1.4
246,770 - MMP_RS01315 0.25 -0.8
246,771 + MMP_RS01315 0.25 -0.6
246,771 + MMP_RS01315 0.25 -1.3
246,771 + MMP_RS01315 0.25 -1.3
246,772 - MMP_RS01315 0.25 +0.2
246,772 - MMP_RS01315 0.25 -2.9
246,823 + MMP_RS01315 0.28 +0.4
246,824 - MMP_RS01315 0.28 +0.7
246,824 - MMP_RS01315 0.28 -1.9
246,825 + MMP_RS01315 0.28 -0.3
246,842 - MMP_RS01315 0.29 +0.2
246,942 - MMP_RS01315 0.34 -1.1
246,946 + MMP_RS01315 0.35 -0.6
247,130 - MMP_RS01315 0.45 +0.3
247,193 - MMP_RS01315 0.49 -1.4
247,193 - MMP_RS01315 0.49 -1.3
247,233 + MMP_RS01315 0.51 -1.4
247,235 - MMP_RS01315 0.51 -1.3
247,246 - MMP_RS01315 0.52 +0.2
247,283 - MMP_RS01315 0.54 -1.8
247,307 + MMP_RS01315 0.55 -1.6
247,311 - MMP_RS01315 0.55 -1.8
247,337 + MMP_RS01315 0.57 -2.0
247,337 + MMP_RS01315 0.57 -0.8
247,365 - MMP_RS01315 0.58 -1.7
247,365 - MMP_RS01315 0.58 -1.1
247,431 - MMP_RS01315 0.62 -0.4
247,431 - MMP_RS01315 0.62 -1.5
247,431 - MMP_RS01315 0.62 -2.3
247,432 + MMP_RS01315 0.62 -1.6
247,432 + MMP_RS01315 0.62 -1.9
247,432 + MMP_RS01315 0.62 -1.3
247,432 + MMP_RS01315 0.62 -0.6
247,435 - MMP_RS01315 0.62 -1.9
247,436 + MMP_RS01315 0.62 -2.0
247,436 + MMP_RS01315 0.62 -0.4
247,460 + MMP_RS01315 0.64 -3.8
247,483 - MMP_RS01315 0.65 -1.0
247,486 + MMP_RS01315 0.65 +1.4
247,654 - MMP_RS01315 0.75 -0.8
247,655 + MMP_RS01315 0.75 -1.4
247,757 - MMP_RS01315 0.80 -2.4
247,782 - MMP_RS01315 0.82 +0.3
247,786 - MMP_RS01315 0.82 -2.7
247,786 - MMP_RS01315 0.82 -0.5
247,790 - MMP_RS01315 0.82 -0.7
247,791 + MMP_RS01315 0.82 +0.5
247,816 - MMP_RS01315 0.84 +0.1
247,819 - MMP_RS01315 0.84 -1.7
247,819 - MMP_RS01315 0.84 -1.5
247,820 + MMP_RS01315 0.84 -1.3
247,822 - MMP_RS01315 0.84 -0.1
247,822 - MMP_RS01315 0.84 -1.2
247,822 - MMP_RS01315 0.84 -0.8
247,822 - MMP_RS01315 0.84 +0.3
247,822 - MMP_RS01315 0.84 -0.6
247,823 + MMP_RS01315 0.84 +0.8
247,823 + MMP_RS01315 0.84 -3.8
247,823 + MMP_RS01315 0.84 +2.5
247,823 + MMP_RS01315 0.84 +0.1
247,823 + MMP_RS01315 0.84 +0.1
247,852 - MMP_RS01315 0.86 -1.1
247,852 - MMP_RS01315 0.86 -1.4
247,852 - MMP_RS01315 0.86 -1.1
247,853 + MMP_RS01315 0.86 -1.8
247,904 - MMP_RS01315 0.89 -0.8
247,905 + MMP_RS01315 0.89 -0.7
247,908 - MMP_RS01315 0.89 -0.2
247,909 + MMP_RS01315 0.89 -1.1
247,925 + +0.6
247,927 - -1.4
247,927 - -0.7
247,929 - -0.3
247,929 - +0.4
247,929 - -1.6
247,930 + +1.1
247,931 - -1.3
247,931 - -2.0
247,931 - +0.5
247,932 + -0.5
247,932 + -1.4
247,992 - -1.0
248,018 - -0.1
248,047 - -0.7
248,081 - +0.5
248,143 - MMP_RS01320 0.15 -0.3
248,218 - MMP_RS01320 0.43 +2.1
248,259 + MMP_RS01320 0.58 -0.7
248,261 - MMP_RS01320 0.59 +0.2
248,272 - MMP_RS01320 0.63 -1.4
248,303 - MMP_RS01320 0.74 -0.4
248,371 - +2.1
248,400 - +1.0
248,400 - -0.0
248,405 - -1.6
248,435 - MMP_RS01325 0.14 -1.1
248,469 + MMP_RS01325 0.23 -0.4
248,480 - MMP_RS01325 0.26 +1.3
248,486 - MMP_RS01325 0.27 -0.3
248,793 + -0.4
248,973 - MMP_RS01330 0.22 +2.0
248,987 - MMP_RS01330 0.23 -1.0
249,032 - MMP_RS01330 0.28 +2.6
249,033 + MMP_RS01330 0.28 -1.2
249,036 - MMP_RS01330 0.28 +1.7
249,036 - MMP_RS01330 0.28 +0.0
249,090 + MMP_RS01330 0.33 -1.1
249,094 - MMP_RS01330 0.34 +1.0
249,094 - MMP_RS01330 0.34 +1.8
249,094 - MMP_RS01330 0.34 +2.0
249,095 + MMP_RS01330 0.34 -0.3
249,095 + MMP_RS01330 0.34 -2.7
249,098 - MMP_RS01330 0.34 +2.2

Or see this region's nucleotide sequence