Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01305 and MMP_RS01310 overlap by 20 nucleotides MMP_RS01310 and MMP_RS01315 are separated by 3 nucleotides MMP_RS01315 and MMP_RS01320 are separated by 1 nucleotides MMP_RS01320 and MMP_RS01325 are separated by 12 nucleotides MMP_RS01325 and MMP_RS01330 overlap by 8 nucleotides
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333
_RS01310
MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100
_RS01315
MMP_RS01320: MMP_RS01320 - hypothetical protein, at 248,102 to 248,371
_RS01320
MMP_RS01325: MMP_RS01325 - dihydroneopterin aldolase family protein, at 248,384 to 248,758
_RS01325
MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767
_RS01330
Position (kb) 246
247
248
249 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 245.339 kb on - strand, within MMP_RS01305 at 245.435 kb on - strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.509 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.561 kb on + strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.622 kb on + strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.701 kb on - strand, within MMP_RS01305 at 245.706 kb on + strand at 245.706 kb on + strand at 245.710 kb on + strand at 245.720 kb on - strand at 245.754 kb on - strand at 245.754 kb on - strand at 245.761 kb on - strand at 245.822 kb on - strand at 245.822 kb on - strand at 245.823 kb on + strand at 245.861 kb on + strand, within MMP_RS01310 at 245.893 kb on - strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.901 kb on - strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.905 kb on + strand, within MMP_RS01310 at 245.906 kb on - strand, within MMP_RS01310 at 245.907 kb on + strand, within MMP_RS01310 at 245.929 kb on + strand, within MMP_RS01310 at 245.933 kb on - strand, within MMP_RS01310 at 245.934 kb on + strand, within MMP_RS01310 at 245.945 kb on - strand, within MMP_RS01310 at 245.946 kb on + strand, within MMP_RS01310 at 245.971 kb on + strand, within MMP_RS01310 at 245.991 kb on - strand, within MMP_RS01310 at 245.998 kb on + strand, within MMP_RS01310 at 246.052 kb on + strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.056 kb on + strand, within MMP_RS01310 at 246.060 kb on + strand, within MMP_RS01310 at 246.124 kb on + strand, within MMP_RS01310 at 246.136 kb on + strand, within MMP_RS01310 at 246.157 kb on - strand, within MMP_RS01310 at 246.233 kb on + strand, within MMP_RS01310 at 246.281 kb on + strand at 246.300 kb on - strand at 246.314 kb on - strand at 246.314 kb on - strand at 246.359 kb on - strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.410 kb on - strand at 246.411 kb on + strand at 246.416 kb on - strand at 246.517 kb on + strand, within MMP_RS01315 at 246.520 kb on + strand, within MMP_RS01315 at 246.527 kb on - strand, within MMP_RS01315 at 246.566 kb on + strand, within MMP_RS01315 at 246.604 kb on - strand, within MMP_RS01315 at 246.643 kb on + strand, within MMP_RS01315 at 246.644 kb on - strand, within MMP_RS01315 at 246.702 kb on - strand, within MMP_RS01315 at 246.703 kb on + strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.736 kb on - strand, within MMP_RS01315 at 246.743 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315 at 246.823 kb on + strand, within MMP_RS01315 at 246.824 kb on - strand, within MMP_RS01315 at 246.824 kb on - strand, within MMP_RS01315 at 246.825 kb on + strand, within MMP_RS01315 at 246.842 kb on - strand, within MMP_RS01315 at 246.942 kb on - strand, within MMP_RS01315 at 246.946 kb on + strand, within MMP_RS01315 at 247.130 kb on - strand, within MMP_RS01315 at 247.193 kb on - strand, within MMP_RS01315 at 247.193 kb on - strand, within MMP_RS01315 at 247.233 kb on + strand, within MMP_RS01315 at 247.235 kb on - strand, within MMP_RS01315 at 247.246 kb on - strand, within MMP_RS01315 at 247.283 kb on - strand, within MMP_RS01315 at 247.307 kb on + strand, within MMP_RS01315 at 247.311 kb on - strand, within MMP_RS01315 at 247.337 kb on + strand, within MMP_RS01315 at 247.337 kb on + strand, within MMP_RS01315 at 247.365 kb on - strand, within MMP_RS01315 at 247.365 kb on - strand, within MMP_RS01315 at 247.431 kb on - strand, within MMP_RS01315 at 247.431 kb on - strand, within MMP_RS01315 at 247.431 kb on - strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.432 kb on + strand, within MMP_RS01315 at 247.435 kb on - strand, within MMP_RS01315 at 247.436 kb on + strand, within MMP_RS01315 at 247.436 kb on + strand, within MMP_RS01315 at 247.460 kb on + strand, within MMP_RS01315 at 247.483 kb on - strand, within MMP_RS01315 at 247.486 kb on + strand, within MMP_RS01315 at 247.654 kb on - strand, within MMP_RS01315 at 247.655 kb on + strand, within MMP_RS01315 at 247.757 kb on - strand, within MMP_RS01315 at 247.782 kb on - strand, within MMP_RS01315 at 247.786 kb on - strand, within MMP_RS01315 at 247.786 kb on - strand, within MMP_RS01315 at 247.790 kb on - strand, within MMP_RS01315 at 247.791 kb on + strand, within MMP_RS01315 at 247.816 kb on - strand, within MMP_RS01315 at 247.819 kb on - strand, within MMP_RS01315 at 247.819 kb on - strand, within MMP_RS01315 at 247.820 kb on + strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.822 kb on - strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.823 kb on + strand, within MMP_RS01315 at 247.852 kb on - strand, within MMP_RS01315 at 247.852 kb on - strand, within MMP_RS01315 at 247.852 kb on - strand, within MMP_RS01315 at 247.853 kb on + strand, within MMP_RS01315 at 247.904 kb on - strand, within MMP_RS01315 at 247.905 kb on + strand, within MMP_RS01315 at 247.908 kb on - strand, within MMP_RS01315 at 247.909 kb on + strand, within MMP_RS01315 at 247.925 kb on + strand at 247.927 kb on - strand at 247.927 kb on - strand at 247.929 kb on - strand at 247.929 kb on - strand at 247.929 kb on - strand at 247.930 kb on + strand at 247.931 kb on - strand at 247.931 kb on - strand at 247.931 kb on - strand at 247.932 kb on + strand at 247.932 kb on + strand at 247.992 kb on - strand at 248.018 kb on - strand at 248.047 kb on - strand at 248.081 kb on - strand at 248.143 kb on - strand, within MMP_RS01320 at 248.218 kb on - strand, within MMP_RS01320 at 248.259 kb on + strand, within MMP_RS01320 at 248.261 kb on - strand, within MMP_RS01320 at 248.272 kb on - strand, within MMP_RS01320 at 248.303 kb on - strand, within MMP_RS01320 at 248.371 kb on - strand at 248.400 kb on - strand at 248.400 kb on - strand at 248.405 kb on - strand at 248.435 kb on - strand, within MMP_RS01325 at 248.469 kb on + strand, within MMP_RS01325 at 248.480 kb on - strand, within MMP_RS01325 at 248.486 kb on - strand, within MMP_RS01325 at 248.793 kb on + strand at 248.973 kb on - strand, within MMP_RS01330 at 248.987 kb on - strand, within MMP_RS01330 at 249.032 kb on - strand, within MMP_RS01330 at 249.033 kb on + strand, within MMP_RS01330 at 249.036 kb on - strand, within MMP_RS01330 at 249.036 kb on - strand, within MMP_RS01330 at 249.090 kb on + strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.095 kb on + strand, within MMP_RS01330 at 249.095 kb on + strand, within MMP_RS01330 at 249.098 kb on - strand, within MMP_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 245,339 - MMP_RS01305 0.47 -2.2 245,435 - MMP_RS01305 0.59 -1.4 245,436 + MMP_RS01305 0.59 +0.1 245,436 + MMP_RS01305 0.59 +0.1 245,436 + MMP_RS01305 0.59 -0.5 245,436 + MMP_RS01305 0.59 -1.8 245,509 - MMP_RS01305 0.67 -0.7 245,560 - MMP_RS01305 0.73 +0.9 245,560 - MMP_RS01305 0.73 +1.1 245,561 + MMP_RS01305 0.73 +0.3 245,621 - MMP_RS01305 0.80 +0.2 245,621 - MMP_RS01305 0.80 -0.6 245,621 - MMP_RS01305 0.80 +1.4 245,621 - MMP_RS01305 0.80 +0.7 245,622 + MMP_RS01305 0.80 -0.4 245,625 - MMP_RS01305 0.81 -1.7 245,625 - MMP_RS01305 0.81 -1.1 245,626 + MMP_RS01305 0.81 -1.4 245,626 + MMP_RS01305 0.81 -1.8 245,626 + MMP_RS01305 0.81 -0.1 245,626 + MMP_RS01305 0.81 -1.8 245,701 - MMP_RS01305 0.90 +0.9 245,706 + +1.3 245,706 + +0.2 245,710 + +0.6 245,720 - -1.4 245,754 - -1.1 245,754 - +0.2 245,761 - -1.8 245,822 - -0.8 245,822 - -0.9 245,823 + +1.4 245,861 + MMP_RS01310 0.16 +0.4 245,893 - MMP_RS01310 0.22 -0.0 245,894 + MMP_RS01310 0.22 +0.2 245,894 + MMP_RS01310 0.22 +0.6 245,901 - MMP_RS01310 0.23 +0.2 245,902 + MMP_RS01310 0.23 -0.4 245,902 + MMP_RS01310 0.23 +0.7 245,905 + MMP_RS01310 0.24 +0.8 245,906 - MMP_RS01310 0.24 -1.3 245,907 + MMP_RS01310 0.24 +0.7 245,929 + MMP_RS01310 0.28 -0.4 245,933 - MMP_RS01310 0.29 +0.9 245,934 + MMP_RS01310 0.29 -1.0 245,945 - MMP_RS01310 0.31 -0.4 245,946 + MMP_RS01310 0.31 -0.8 245,971 + MMP_RS01310 0.36 -0.1 245,991 - MMP_RS01310 0.39 -0.3 245,998 + MMP_RS01310 0.40 +1.0 246,052 + MMP_RS01310 0.50 -2.8 246,055 - MMP_RS01310 0.51 +0.3 246,055 - MMP_RS01310 0.51 -0.9 246,055 - MMP_RS01310 0.51 -0.2 246,056 + MMP_RS01310 0.51 -0.7 246,060 + MMP_RS01310 0.51 -2.4 246,124 + MMP_RS01310 0.63 +0.3 246,136 + MMP_RS01310 0.65 -2.7 246,157 - MMP_RS01310 0.69 -2.0 246,233 + MMP_RS01310 0.82 +1.2 246,281 + +0.9 246,300 - -1.9 246,314 - -1.7 246,314 - -1.4 246,359 - -0.4 246,403 + -0.3 246,403 + -0.9 246,403 + -0.6 246,410 - +1.0 246,411 + -1.0 246,416 - -0.6 246,517 + MMP_RS01315 0.10 -1.7 246,520 + MMP_RS01315 0.10 -0.3 246,527 - MMP_RS01315 0.11 -1.4 246,566 + MMP_RS01315 0.13 -2.6 246,604 - MMP_RS01315 0.15 -1.5 246,643 + MMP_RS01315 0.17 -0.8 246,644 - MMP_RS01315 0.17 -1.3 246,702 - MMP_RS01315 0.21 -1.3 246,703 + MMP_RS01315 0.21 -1.2 246,720 - MMP_RS01315 0.22 -0.6 246,720 - MMP_RS01315 0.22 -1.9 246,736 - MMP_RS01315 0.23 -1.7 246,743 - MMP_RS01315 0.23 +0.8 246,751 - MMP_RS01315 0.23 -1.0 246,751 - MMP_RS01315 0.23 -2.7 246,751 - MMP_RS01315 0.23 -0.5 246,752 + MMP_RS01315 0.24 -0.5 246,752 + MMP_RS01315 0.24 +0.1 246,770 - MMP_RS01315 0.25 +0.7 246,770 - MMP_RS01315 0.25 -1.4 246,770 - MMP_RS01315 0.25 -0.8 246,771 + MMP_RS01315 0.25 -0.6 246,771 + MMP_RS01315 0.25 -1.3 246,771 + MMP_RS01315 0.25 -1.3 246,772 - MMP_RS01315 0.25 +0.2 246,772 - MMP_RS01315 0.25 -2.9 246,823 + MMP_RS01315 0.28 +0.4 246,824 - MMP_RS01315 0.28 +0.7 246,824 - MMP_RS01315 0.28 -1.9 246,825 + MMP_RS01315 0.28 -0.3 246,842 - MMP_RS01315 0.29 +0.2 246,942 - MMP_RS01315 0.34 -1.1 246,946 + MMP_RS01315 0.35 -0.6 247,130 - MMP_RS01315 0.45 +0.3 247,193 - MMP_RS01315 0.49 -1.4 247,193 - MMP_RS01315 0.49 -1.3 247,233 + MMP_RS01315 0.51 -1.4 247,235 - MMP_RS01315 0.51 -1.3 247,246 - MMP_RS01315 0.52 +0.2 247,283 - MMP_RS01315 0.54 -1.8 247,307 + MMP_RS01315 0.55 -1.6 247,311 - MMP_RS01315 0.55 -1.8 247,337 + MMP_RS01315 0.57 -2.0 247,337 + MMP_RS01315 0.57 -0.8 247,365 - MMP_RS01315 0.58 -1.7 247,365 - MMP_RS01315 0.58 -1.1 247,431 - MMP_RS01315 0.62 -0.4 247,431 - MMP_RS01315 0.62 -1.5 247,431 - MMP_RS01315 0.62 -2.3 247,432 + MMP_RS01315 0.62 -1.6 247,432 + MMP_RS01315 0.62 -1.9 247,432 + MMP_RS01315 0.62 -1.3 247,432 + MMP_RS01315 0.62 -0.6 247,435 - MMP_RS01315 0.62 -1.9 247,436 + MMP_RS01315 0.62 -2.0 247,436 + MMP_RS01315 0.62 -0.4 247,460 + MMP_RS01315 0.64 -3.8 247,483 - MMP_RS01315 0.65 -1.0 247,486 + MMP_RS01315 0.65 +1.4 247,654 - MMP_RS01315 0.75 -0.8 247,655 + MMP_RS01315 0.75 -1.4 247,757 - MMP_RS01315 0.80 -2.4 247,782 - MMP_RS01315 0.82 +0.3 247,786 - MMP_RS01315 0.82 -2.7 247,786 - MMP_RS01315 0.82 -0.5 247,790 - MMP_RS01315 0.82 -0.7 247,791 + MMP_RS01315 0.82 +0.5 247,816 - MMP_RS01315 0.84 +0.1 247,819 - MMP_RS01315 0.84 -1.7 247,819 - MMP_RS01315 0.84 -1.5 247,820 + MMP_RS01315 0.84 -1.3 247,822 - MMP_RS01315 0.84 -0.1 247,822 - MMP_RS01315 0.84 -1.2 247,822 - MMP_RS01315 0.84 -0.8 247,822 - MMP_RS01315 0.84 +0.3 247,822 - MMP_RS01315 0.84 -0.6 247,823 + MMP_RS01315 0.84 +0.8 247,823 + MMP_RS01315 0.84 -3.8 247,823 + MMP_RS01315 0.84 +2.5 247,823 + MMP_RS01315 0.84 +0.1 247,823 + MMP_RS01315 0.84 +0.1 247,852 - MMP_RS01315 0.86 -1.1 247,852 - MMP_RS01315 0.86 -1.4 247,852 - MMP_RS01315 0.86 -1.1 247,853 + MMP_RS01315 0.86 -1.8 247,904 - MMP_RS01315 0.89 -0.8 247,905 + MMP_RS01315 0.89 -0.7 247,908 - MMP_RS01315 0.89 -0.2 247,909 + MMP_RS01315 0.89 -1.1 247,925 + +0.6 247,927 - -1.4 247,927 - -0.7 247,929 - -0.3 247,929 - +0.4 247,929 - -1.6 247,930 + +1.1 247,931 - -1.3 247,931 - -2.0 247,931 - +0.5 247,932 + -0.5 247,932 + -1.4 247,992 - -1.0 248,018 - -0.1 248,047 - -0.7 248,081 - +0.5 248,143 - MMP_RS01320 0.15 -0.3 248,218 - MMP_RS01320 0.43 +2.1 248,259 + MMP_RS01320 0.58 -0.7 248,261 - MMP_RS01320 0.59 +0.2 248,272 - MMP_RS01320 0.63 -1.4 248,303 - MMP_RS01320 0.74 -0.4 248,371 - +2.1 248,400 - +1.0 248,400 - -0.0 248,405 - -1.6 248,435 - MMP_RS01325 0.14 -1.1 248,469 + MMP_RS01325 0.23 -0.4 248,480 - MMP_RS01325 0.26 +1.3 248,486 - MMP_RS01325 0.27 -0.3 248,793 + -0.4 248,973 - MMP_RS01330 0.22 +2.0 248,987 - MMP_RS01330 0.23 -1.0 249,032 - MMP_RS01330 0.28 +2.6 249,033 + MMP_RS01330 0.28 -1.2 249,036 - MMP_RS01330 0.28 +1.7 249,036 - MMP_RS01330 0.28 +0.0 249,090 + MMP_RS01330 0.33 -1.1 249,094 - MMP_RS01330 0.34 +1.0 249,094 - MMP_RS01330 0.34 +1.8 249,094 - MMP_RS01330 0.34 +2.0 249,095 + MMP_RS01330 0.34 -0.3 249,095 + MMP_RS01330 0.34 -2.7 249,098 - MMP_RS01330 0.34 +2.2
Or see this region's nucleotide sequence