Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01225

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01215 and MMP_RS01220 are separated by 78 nucleotidesMMP_RS01220 and MMP_RS01225 are separated by 9 nucleotidesMMP_RS01225 and MMP_RS01230 are separated by 9 nucleotides MMP_RS01215: MMP_RS01215 - sodium/proline symporter PutP, at 229,031 to 230,509 _RS01215 MMP_RS01220: MMP_RS01220 - hypothetical protein, at 230,588 to 230,827 _RS01220 MMP_RS01225: MMP_RS01225 - DUF5379 domain-containing protein, at 230,837 to 231,115 _RS01225 MMP_RS01230: MMP_RS01230 - glutamate-1-semialdehyde 2 1-aminomutase, at 231,125 to 232,408 _RS01230 Position (kb) 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 229.965 kb on - strand, within MMP_RS01215at 229.966 kb on + strand, within MMP_RS01215at 230.437 kb on + strandat 230.544 kb on + strandat 230.544 kb on + strandat 230.544 kb on + strandat 230.547 kb on - strandat 230.548 kb on + strandat 230.557 kb on + strandat 230.557 kb on + strandat 230.588 kb on + strandat 230.637 kb on - strand, within MMP_RS01220at 230.687 kb on + strand, within MMP_RS01220at 230.705 kb on + strand, within MMP_RS01220at 230.720 kb on - strand, within MMP_RS01220at 230.724 kb on - strand, within MMP_RS01220at 230.724 kb on - strand, within MMP_RS01220at 230.743 kb on + strand, within MMP_RS01220at 230.755 kb on - strand, within MMP_RS01220at 230.756 kb on + strand, within MMP_RS01220at 230.756 kb on + strand, within MMP_RS01220at 230.756 kb on + strand, within MMP_RS01220at 230.759 kb on - strand, within MMP_RS01220at 230.760 kb on + strand, within MMP_RS01220at 230.762 kb on + strand, within MMP_RS01220at 230.762 kb on + strand, within MMP_RS01220at 230.792 kb on + strand, within MMP_RS01220at 230.844 kb on - strandat 230.844 kb on - strandat 230.906 kb on - strand, within MMP_RS01225at 230.906 kb on - strand, within MMP_RS01225at 230.912 kb on - strand, within MMP_RS01225at 230.912 kb on - strand, within MMP_RS01225at 230.912 kb on - strand, within MMP_RS01225at 230.955 kb on - strand, within MMP_RS01225at 230.974 kb on + strand, within MMP_RS01225at 230.977 kb on - strand, within MMP_RS01225at 230.977 kb on - strand, within MMP_RS01225at 231.095 kb on - strandat 231.162 kb on - strandat 231.357 kb on - strandat 231.734 kb on + strandat 232.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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229,965 - MMP_RS01215 0.63 -0.4
229,966 + MMP_RS01215 0.63 +1.8
230,437 + +0.2
230,544 + +1.8
230,544 + +2.7
230,544 + +0.7
230,547 - +6.6
230,548 + +0.8
230,557 + +0.4
230,557 + +1.1
230,588 + +0.3
230,637 - MMP_RS01220 0.20 +10.8
230,687 + MMP_RS01220 0.41 +9.6
230,705 + MMP_RS01220 0.49 +9.0
230,720 - MMP_RS01220 0.55 +7.9
230,724 - MMP_RS01220 0.57 +1.3
230,724 - MMP_RS01220 0.57 +4.3
230,743 + MMP_RS01220 0.65 +10.1
230,755 - MMP_RS01220 0.70 +1.8
230,756 + MMP_RS01220 0.70 +8.1
230,756 + MMP_RS01220 0.70 +11.1
230,756 + MMP_RS01220 0.70 +10.1
230,759 - MMP_RS01220 0.71 +2.7
230,760 + MMP_RS01220 0.72 +11.4
230,762 + MMP_RS01220 0.72 +7.8
230,762 + MMP_RS01220 0.72 +10.7
230,792 + MMP_RS01220 0.85 +11.5
230,844 - -2.9
230,844 - -1.7
230,906 - MMP_RS01225 0.25 -2.4
230,906 - MMP_RS01225 0.25 -0.9
230,912 - MMP_RS01225 0.27 -2.2
230,912 - MMP_RS01225 0.27 +0.3
230,912 - MMP_RS01225 0.27 -0.7
230,955 - MMP_RS01225 0.42 -3.2
230,974 + MMP_RS01225 0.49 -2.7
230,977 - MMP_RS01225 0.50 -0.6
230,977 - MMP_RS01225 0.50 -1.2
231,095 - -1.5
231,162 - -1.3
231,357 - -3.0
231,734 + -1.1
232,022 + -1.2

Or see this region's nucleotide sequence