Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01155

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01150 and MMP_RS01155 are separated by 15 nucleotidesMMP_RS01155 and MMP_RS01160 are separated by 137 nucleotides MMP_RS01150: MMP_RS01150 - aldo/keto reductase, at 215,314 to 216,543 _RS01150 MMP_RS01155: MMP_RS01155 - XRE family transcriptional regulator, at 216,559 to 217,113 _RS01155 MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150 _RS01160 Position (kb) 216 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 215.603 kb on + strand, within MMP_RS01150at 215.650 kb on - strand, within MMP_RS01150at 215.835 kb on - strand, within MMP_RS01150at 216.216 kb on - strand, within MMP_RS01150at 216.331 kb on + strand, within MMP_RS01150at 216.486 kb on + strandat 216.510 kb on - strandat 216.572 kb on - strandat 216.572 kb on - strandat 216.572 kb on - strandat 216.575 kb on + strandat 216.640 kb on + strand, within MMP_RS01155at 216.739 kb on + strand, within MMP_RS01155at 216.790 kb on - strand, within MMP_RS01155at 216.824 kb on + strand, within MMP_RS01155at 216.857 kb on - strand, within MMP_RS01155at 216.924 kb on - strand, within MMP_RS01155at 216.955 kb on - strand, within MMP_RS01155at 217.120 kb on - strandat 217.136 kb on - strandat 217.140 kb on + strandat 217.163 kb on + strandat 217.171 kb on - strandat 217.180 kb on - strandat 217.180 kb on - strandat 217.181 kb on + strandat 217.230 kb on + strandat 217.232 kb on - strandat 217.233 kb on + strandat 217.238 kb on + strandat 217.379 kb on + strand, within MMP_RS01160at 217.391 kb on + strand, within MMP_RS01160at 217.408 kb on - strand, within MMP_RS01160at 217.464 kb on - strand, within MMP_RS01160at 217.464 kb on - strand, within MMP_RS01160at 217.504 kb on + strand, within MMP_RS01160at 217.860 kb on - strand, within MMP_RS01160at 217.860 kb on - strand, within MMP_RS01160at 217.860 kb on - strand, within MMP_RS01160at 217.861 kb on + strand, within MMP_RS01160at 217.929 kb on - strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160at 217.930 kb on + strand, within MMP_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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215,603 + MMP_RS01150 0.23 -1.4
215,650 - MMP_RS01150 0.27 -1.6
215,835 - MMP_RS01150 0.42 +0.8
216,216 - MMP_RS01150 0.73 +1.5
216,331 + MMP_RS01150 0.83 +1.5
216,486 + +1.9
216,510 - -0.9
216,572 - -0.7
216,572 - -0.3
216,572 - -0.5
216,575 + -0.1
216,640 + MMP_RS01155 0.15 -2.3
216,739 + MMP_RS01155 0.32 -0.9
216,790 - MMP_RS01155 0.42 -0.4
216,824 + MMP_RS01155 0.48 -0.5
216,857 - MMP_RS01155 0.54 -1.2
216,924 - MMP_RS01155 0.66 -0.7
216,955 - MMP_RS01155 0.71 -1.6
217,120 - -2.1
217,136 - -0.1
217,140 + -1.1
217,163 + -0.1
217,171 - -0.6
217,180 - +1.8
217,180 - +0.5
217,181 + -0.4
217,230 + -0.2
217,232 - +0.7
217,233 + +0.9
217,238 + +0.2
217,379 + MMP_RS01160 0.14 -0.3
217,391 + MMP_RS01160 0.16 +2.4
217,408 - MMP_RS01160 0.17 -0.1
217,464 - MMP_RS01160 0.24 -2.7
217,464 - MMP_RS01160 0.24 -1.5
217,504 + MMP_RS01160 0.28 +1.3
217,860 - MMP_RS01160 0.68 +1.2
217,860 - MMP_RS01160 0.68 -0.0
217,860 - MMP_RS01160 0.68 +0.3
217,861 + MMP_RS01160 0.68 -0.8
217,929 - MMP_RS01160 0.75 +1.3
217,930 + MMP_RS01160 0.75 +0.3
217,930 + MMP_RS01160 0.75 -0.6
217,930 + MMP_RS01160 0.75 -0.5
217,930 + MMP_RS01160 0.75 -1.0

Or see this region's nucleotide sequence