Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00975

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00970 and MMP_RS00975 overlap by 4 nucleotidesMMP_RS00975 and MMP_RS00980 are separated by 142 nucleotidesMMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699 _RS00970 MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072 _RS00975 MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679 _RS00980 MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070 _RS00985 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 180.924 kb on - strandat 180.933 kb on - strandat 181.086 kb on - strandat 181.086 kb on - strandat 181.149 kb on - strandat 181.151 kb on - strandat 181.152 kb on + strandat 181.291 kb on + strandat 181.406 kb on + strandat 181.434 kb on - strandat 181.464 kb on - strandat 181.482 kb on - strandat 181.501 kb on + strandat 181.621 kb on - strandat 181.636 kb on + strandat 181.666 kb on - strandat 181.731 kb on - strandat 181.883 kb on + strand, within MMP_RS00975at 181.896 kb on - strand, within MMP_RS00975at 182.019 kb on + strand, within MMP_RS00975at 182.091 kb on - strand, within MMP_RS00975at 182.092 kb on + strand, within MMP_RS00975at 182.132 kb on + strand, within MMP_RS00975at 182.198 kb on + strand, within MMP_RS00975at 182.281 kb on - strand, within MMP_RS00975at 182.293 kb on + strand, within MMP_RS00975at 182.328 kb on - strand, within MMP_RS00975at 182.328 kb on - strand, within MMP_RS00975at 182.329 kb on + strand, within MMP_RS00975at 182.332 kb on - strand, within MMP_RS00975at 182.359 kb on - strand, within MMP_RS00975at 182.399 kb on + strand, within MMP_RS00975at 182.579 kb on + strand, within MMP_RS00975at 182.621 kb on + strand, within MMP_RS00975at 182.696 kb on + strand, within MMP_RS00975at 182.714 kb on - strand, within MMP_RS00975at 182.715 kb on + strand, within MMP_RS00975at 182.782 kb on - strand, within MMP_RS00975at 182.895 kb on - strand, within MMP_RS00975at 182.950 kb on + strandat 183.001 kb on - strandat 183.007 kb on - strandat 183.022 kb on + strandat 183.031 kb on + strandat 183.082 kb on - strandat 183.096 kb on - strandat 183.114 kb on - strandat 183.114 kb on - strandat 183.160 kb on - strandat 183.160 kb on - strandat 183.161 kb on + strandat 183.164 kb on - strandat 183.164 kb on - strandat 183.165 kb on + strandat 183.165 kb on + strandat 183.172 kb on + strandat 183.192 kb on - strandat 183.198 kb on - strandat 183.198 kb on - strandat 183.198 kb on - strandat 183.236 kb on - strandat 183.248 kb on + strandat 183.248 kb on + strandat 183.344 kb on - strand, within MMP_RS00980at 183.345 kb on + strand, within MMP_RS00980at 183.345 kb on + strand, within MMP_RS00980at 183.350 kb on - strand, within MMP_RS00980at 183.351 kb on + strand, within MMP_RS00980at 183.370 kb on - strand, within MMP_RS00980at 183.371 kb on + strand, within MMP_RS00980at 183.467 kb on - strand, within MMP_RS00980at 183.540 kb on - strand, within MMP_RS00980at 183.552 kb on - strand, within MMP_RS00980at 183.611 kb on - strand, within MMP_RS00980at 183.611 kb on - strand, within MMP_RS00980at 183.612 kb on + strand, within MMP_RS00980at 183.613 kb on - strand, within MMP_RS00980at 183.613 kb on - strand, within MMP_RS00980at 183.613 kb on - strand, within MMP_RS00980at 183.614 kb on + strand, within MMP_RS00980at 183.618 kb on - strand, within MMP_RS00980at 183.619 kb on + strand, within MMP_RS00980at 183.619 kb on + strand, within MMP_RS00980at 183.634 kb on - strandat 183.689 kb on + strandat 183.689 kb on + strandat 183.800 kb on + strandat 183.813 kb on + strandat 183.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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180,924 - -1.2
180,933 - +0.8
181,086 - -1.3
181,086 - -1.4
181,149 - +0.6
181,151 - -0.7
181,152 + -1.2
181,291 + -1.1
181,406 + +0.9
181,434 - -1.5
181,464 - -1.7
181,482 - -0.8
181,501 + +2.2
181,621 - +0.6
181,636 + +0.2
181,666 - -1.1
181,731 - -0.6
181,883 + MMP_RS00975 0.14 +2.6
181,896 - MMP_RS00975 0.15 +0.9
182,019 + MMP_RS00975 0.23 -0.9
182,091 - MMP_RS00975 0.29 +4.3
182,092 + MMP_RS00975 0.29 +2.6
182,132 + MMP_RS00975 0.32 +3.4
182,198 + MMP_RS00975 0.36 +1.5
182,281 - MMP_RS00975 0.42 +3.1
182,293 + MMP_RS00975 0.43 -1.5
182,328 - MMP_RS00975 0.46 +3.6
182,328 - MMP_RS00975 0.46 +3.2
182,329 + MMP_RS00975 0.46 +0.0
182,332 - MMP_RS00975 0.46 +1.5
182,359 - MMP_RS00975 0.48 -1.6
182,399 + MMP_RS00975 0.51 +4.4
182,579 + MMP_RS00975 0.64 +3.9
182,621 + MMP_RS00975 0.67 +2.2
182,696 + MMP_RS00975 0.73 +2.2
182,714 - MMP_RS00975 0.74 +1.6
182,715 + MMP_RS00975 0.74 +4.9
182,782 - MMP_RS00975 0.79 +2.0
182,895 - MMP_RS00975 0.87 -0.9
182,950 + -0.7
183,001 - +4.2
183,007 - +3.1
183,022 + +2.3
183,031 + +6.3
183,082 - -0.3
183,096 - +5.2
183,114 - +0.1
183,114 - +1.0
183,160 - -0.5
183,160 - +0.2
183,161 + -0.8
183,164 - +1.0
183,164 - +0.8
183,165 + -2.0
183,165 + +0.5
183,172 + -0.8
183,192 - +0.9
183,198 - -0.2
183,198 - -0.2
183,198 - -1.7
183,236 - -3.2
183,248 + -1.1
183,248 + -0.5
183,344 - MMP_RS00980 0.28 -0.3
183,345 + MMP_RS00980 0.28 +1.8
183,345 + MMP_RS00980 0.28 -2.1
183,350 - MMP_RS00980 0.29 -0.8
183,351 + MMP_RS00980 0.29 -1.8
183,370 - MMP_RS00980 0.33 +0.8
183,371 + MMP_RS00980 0.34 +1.0
183,467 - MMP_RS00980 0.54 -1.0
183,540 - MMP_RS00980 0.70 -0.2
183,552 - MMP_RS00980 0.72 +0.8
183,611 - MMP_RS00980 0.85 +0.9
183,611 - MMP_RS00980 0.85 +2.0
183,612 + MMP_RS00980 0.85 +1.6
183,613 - MMP_RS00980 0.86 +1.6
183,613 - MMP_RS00980 0.86 +1.3
183,613 - MMP_RS00980 0.86 +0.6
183,614 + MMP_RS00980 0.86 +0.1
183,618 - MMP_RS00980 0.87 -0.0
183,619 + MMP_RS00980 0.87 -0.9
183,619 + MMP_RS00980 0.87 +2.1
183,634 - +1.2
183,689 + +1.1
183,689 + +0.9
183,800 + +0.3
183,813 + -1.2
183,923 - +3.1

Or see this region's nucleotide sequence