Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00850

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00845 and MMP_RS00850 are separated by 33 nucleotidesMMP_RS00850 and MMP_RS00855 are separated by 69 nucleotidesMMP_RS00855 and MMP_RS00860 are separated by 4 nucleotides MMP_RS00845: MMP_RS00845 - acetate--CoA ligase, at 158,021 to 159,931 _RS00845 MMP_RS00850: MMP_RS00850 - TIGR01177 family methyltransferase, at 159,965 to 161,017 _RS00850 MMP_RS00855: MMP_RS00855 - DUF367 family protein, at 161,087 to 161,602 _RS00855 MMP_RS00860: MMP_RS00860 - 50S ribosomal protein L40e, at 161,607 to 161,750 _RS00860 Position (kb) 159 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 159.061 kb on - strand, within MMP_RS00845at 159.099 kb on - strand, within MMP_RS00845at 159.165 kb on + strand, within MMP_RS00845at 159.172 kb on + strand, within MMP_RS00845at 159.232 kb on - strand, within MMP_RS00845at 159.233 kb on + strand, within MMP_RS00845at 159.235 kb on - strand, within MMP_RS00845at 159.235 kb on - strand, within MMP_RS00845at 159.237 kb on - strand, within MMP_RS00845at 159.237 kb on - strand, within MMP_RS00845at 159.237 kb on - strand, within MMP_RS00845at 159.237 kb on - strand, within MMP_RS00845at 159.238 kb on + strand, within MMP_RS00845at 159.238 kb on + strand, within MMP_RS00845at 159.669 kb on - strand, within MMP_RS00845at 159.929 kb on - strandat 159.988 kb on - strandat 159.988 kb on - strandat 159.988 kb on - strandat 159.989 kb on + strandat 159.998 kb on + strandat 160.077 kb on + strand, within MMP_RS00850at 160.119 kb on + strand, within MMP_RS00850at 160.185 kb on + strand, within MMP_RS00850at 160.344 kb on + strand, within MMP_RS00850at 160.481 kb on - strand, within MMP_RS00850at 160.542 kb on - strand, within MMP_RS00850at 160.787 kb on - strand, within MMP_RS00850at 161.052 kb on - strandat 161.052 kb on - strandat 161.052 kb on - strandat 161.059 kb on - strandat 161.060 kb on + strandat 161.067 kb on - strandat 161.067 kb on - strandat 161.067 kb on - strandat 161.068 kb on + strandat 161.068 kb on + strandat 161.069 kb on - strandat 161.069 kb on - strandat 161.069 kb on - strandat 161.070 kb on + strandat 161.070 kb on + strandat 161.071 kb on - strandat 161.071 kb on - strandat 161.071 kb on - strandat 161.072 kb on + strandat 161.072 kb on + strandat 161.100 kb on - strandat 161.101 kb on + strandat 161.102 kb on - strandat 161.102 kb on - strandat 161.134 kb on - strandat 161.134 kb on - strandat 161.176 kb on - strand, within MMP_RS00855at 161.214 kb on - strand, within MMP_RS00855at 161.260 kb on - strand, within MMP_RS00855at 161.262 kb on - strand, within MMP_RS00855at 161.408 kb on + strand, within MMP_RS00855at 161.436 kb on + strand, within MMP_RS00855at 161.436 kb on + strand, within MMP_RS00855at 161.749 kb on + strandat 161.867 kb on + strandat 161.885 kb on + strandat 161.916 kb on - strandat 161.981 kb on + strandat 162.004 kb on + strandat 162.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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159,061 - MMP_RS00845 0.54 +1.3
159,099 - MMP_RS00845 0.56 -0.3
159,165 + MMP_RS00845 0.60 +1.5
159,172 + MMP_RS00845 0.60 -1.1
159,232 - MMP_RS00845 0.63 +1.3
159,233 + MMP_RS00845 0.63 +1.1
159,235 - MMP_RS00845 0.64 +0.4
159,235 - MMP_RS00845 0.64 -0.3
159,237 - MMP_RS00845 0.64 -1.6
159,237 - MMP_RS00845 0.64 -0.8
159,237 - MMP_RS00845 0.64 +0.6
159,237 - MMP_RS00845 0.64 -2.0
159,238 + MMP_RS00845 0.64 -0.1
159,238 + MMP_RS00845 0.64 +1.4
159,669 - MMP_RS00845 0.86 +2.2
159,929 - +0.3
159,988 - +1.2
159,988 - -0.5
159,988 - -1.2
159,989 + +0.3
159,998 + +1.2
160,077 + MMP_RS00850 0.11 -0.0
160,119 + MMP_RS00850 0.15 -1.0
160,185 + MMP_RS00850 0.21 -1.1
160,344 + MMP_RS00850 0.36 +0.0
160,481 - MMP_RS00850 0.49 -0.7
160,542 - MMP_RS00850 0.55 -2.5
160,787 - MMP_RS00850 0.78 -3.0
161,052 - +2.4
161,052 - +2.3
161,052 - -2.5
161,059 - -2.7
161,060 + -0.3
161,067 - +2.5
161,067 - +1.2
161,067 - +2.6
161,068 + +1.5
161,068 + -1.1
161,069 - +1.5
161,069 - +0.5
161,069 - +2.2
161,070 + +0.1
161,070 + +0.3
161,071 - +1.8
161,071 - -0.2
161,071 - -3.1
161,072 + -2.0
161,072 + -0.3
161,100 - +0.0
161,101 + +3.1
161,102 - -1.8
161,102 - +2.3
161,134 - +0.7
161,134 - +0.3
161,176 - MMP_RS00855 0.17 -0.9
161,214 - MMP_RS00855 0.25 -0.7
161,260 - MMP_RS00855 0.34 -0.9
161,262 - MMP_RS00855 0.34 +0.3
161,408 + MMP_RS00855 0.62 -0.9
161,436 + MMP_RS00855 0.68 -1.4
161,436 + MMP_RS00855 0.68 -0.5
161,749 + -0.4
161,867 + -1.7
161,885 + -1.0
161,916 - -1.6
161,981 + +0.0
162,004 + -2.3
162,007 + +1.4

Or see this region's nucleotide sequence