Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00730

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00725 and MMP_RS00730 are separated by 28 nucleotidesMMP_RS00730 and MMP_RS00735 are separated by 59 nucleotides MMP_RS00725: MMP_RS00725 - 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 130,979 to 132,511 _RS00725 MMP_RS00730: MMP_RS00730 - 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB, at 132,540 to 133,565 _RS00730 MMP_RS00735: MMP_RS00735 - 5 10-methenyltetrahydromethanopterin hydrogenase, at 133,625 to 134,689 _RS00735 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 131.612 kb on + strand, within MMP_RS00725at 131.657 kb on + strand, within MMP_RS00725at 131.738 kb on - strand, within MMP_RS00725at 131.786 kb on - strand, within MMP_RS00725at 132.136 kb on - strand, within MMP_RS00725at 132.392 kb on - strandat 132.439 kb on - strandat 132.582 kb on - strandat 132.583 kb on + strandat 132.583 kb on + strandat 132.583 kb on + strandat 132.583 kb on + strandat 132.899 kb on - strand, within MMP_RS00730at 132.942 kb on - strand, within MMP_RS00730at 133.070 kb on - strand, within MMP_RS00730at 133.104 kb on - strand, within MMP_RS00730at 133.174 kb on + strand, within MMP_RS00730at 133.288 kb on + strand, within MMP_RS00730at 133.362 kb on - strand, within MMP_RS00730at 133.441 kb on - strand, within MMP_RS00730at 133.490 kb on - strandat 133.586 kb on - strandat 133.609 kb on - strandat 133.622 kb on - strandat 133.713 kb on + strandat 134.255 kb on - strand, within MMP_RS00735at 134.255 kb on - strand, within MMP_RS00735at 134.424 kb on + strand, within MMP_RS00735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
remove
131,612 + MMP_RS00725 0.41 +0.4
131,657 + MMP_RS00725 0.44 -2.2
131,738 - MMP_RS00725 0.50 -1.2
131,786 - MMP_RS00725 0.53 -0.7
132,136 - MMP_RS00725 0.75 -2.9
132,392 - -1.2
132,439 - -0.0
132,582 - -0.2
132,583 + -2.2
132,583 + -1.8
132,583 + -1.2
132,583 + -0.9
132,899 - MMP_RS00730 0.35 -1.2
132,942 - MMP_RS00730 0.39 -1.7
133,070 - MMP_RS00730 0.52 -0.7
133,104 - MMP_RS00730 0.55 -2.0
133,174 + MMP_RS00730 0.62 -2.1
133,288 + MMP_RS00730 0.73 +0.0
133,362 - MMP_RS00730 0.80 -3.1
133,441 - MMP_RS00730 0.88 -1.1
133,490 - -2.1
133,586 - +0.2
133,609 - -1.3
133,622 - -1.4
133,713 + -0.8
134,255 - MMP_RS00735 0.59 -1.8
134,255 - MMP_RS00735 0.59 -2.0
134,424 + MMP_RS00735 0.75 -2.6

Or see this region's nucleotide sequence