Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00710

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00695 and MMP_RS00700 are separated by 11 nucleotidesMMP_RS00700 and MMP_RS00705 are separated by 12 nucleotidesMMP_RS00705 and MMP_RS00710 are separated by 3 nucleotidesMMP_RS00710 and MMP_RS00715 are separated by 180 nucleotides MMP_RS00695: MMP_RS00695 - biotin--[acetyl-CoA-carboxylase] ligase, at 126,554 to 127,249 _RS00695 MMP_RS00700: MMP_RS00700 - OB-fold nucleic acid binding domain-containing protein, at 127,261 to 127,647 _RS00700 MMP_RS00705: MMP_RS00705 - hypothetical protein, at 127,660 to 127,977 _RS00705 MMP_RS00710: MMP_RS00710 - hypothetical protein, at 127,981 to 128,889 _RS00710 MMP_RS00715: MMP_RS00715 - formate-dependent phosphoribosylglycinamide formyltransferase, at 129,070 to 130,236 _RS00715 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 127.200 kb on - strandat 127.262 kb on - strandat 127.276 kb on - strandat 127.283 kb on + strandat 127.327 kb on - strand, within MMP_RS00700at 127.332 kb on + strand, within MMP_RS00700at 127.356 kb on - strand, within MMP_RS00700at 127.496 kb on - strand, within MMP_RS00700at 127.517 kb on - strand, within MMP_RS00700at 127.563 kb on + strand, within MMP_RS00700at 127.831 kb on + strand, within MMP_RS00705at 127.841 kb on + strand, within MMP_RS00705at 128.064 kb on + strandat 128.205 kb on - strand, within MMP_RS00710at 128.546 kb on + strand, within MMP_RS00710at 128.546 kb on + strand, within MMP_RS00710at 128.777 kb on + strand, within MMP_RS00710at 128.800 kb on - strandat 128.800 kb on - strandat 128.829 kb on - strandat 128.858 kb on + strandat 128.858 kb on + strandat 128.859 kb on - strandat 128.859 kb on - strandat 128.967 kb on - strandat 128.989 kb on - strandat 128.990 kb on + strandat 128.995 kb on + strandat 128.996 kb on - strandat 128.996 kb on - strandat 128.996 kb on - strandat 128.999 kb on - strandat 129.001 kb on - strandat 129.028 kb on - strandat 129.225 kb on - strandat 129.638 kb on - strandat 129.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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127,200 - -0.8
127,262 - +0.1
127,276 - +2.1
127,283 + +0.2
127,327 - MMP_RS00700 0.17 +1.7
127,332 + MMP_RS00700 0.18 -1.5
127,356 - MMP_RS00700 0.25 -0.2
127,496 - MMP_RS00700 0.61 -0.9
127,517 - MMP_RS00700 0.66 -0.4
127,563 + MMP_RS00700 0.78 +2.0
127,831 + MMP_RS00705 0.54 -1.6
127,841 + MMP_RS00705 0.57 +0.6
128,064 + +0.7
128,205 - MMP_RS00710 0.25 +0.2
128,546 + MMP_RS00710 0.62 -0.9
128,546 + MMP_RS00710 0.62 -0.9
128,777 + MMP_RS00710 0.88 -1.5
128,800 - +0.3
128,800 - +1.0
128,829 - +1.0
128,858 + -0.2
128,858 + +1.3
128,859 - -2.1
128,859 - -1.3
128,967 - +1.0
128,989 - +1.2
128,990 + -1.4
128,995 + -0.4
128,996 - +0.2
128,996 - +0.4
128,996 - -0.6
128,999 - +0.8
129,001 - -1.2
129,028 - +3.2
129,225 - +1.5
129,638 - -0.5
129,875 - +1.4

Or see this region's nucleotide sequence