Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00625

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00605 and MMP_RS00610 are separated by 33 nucleotidesMMP_RS00610 and MMP_RS00615 are separated by 20 nucleotidesMMP_RS00615 and MMP_RS00620 are separated by 52 nucleotidesMMP_RS00620 and MMP_RS00625 are separated by 89 nucleotidesMMP_RS00625 and MMP_RS00630 are separated by 102 nucleotidesMMP_RS00630 and MMP_RS00635 are separated by 9 nucleotides MMP_RS00605: MMP_RS00605 - tRNA-Asp, at 113,418 to 113,492 _RS00605 MMP_RS00610: MMP_RS00610 - tRNA-Lys, at 113,526 to 113,599 _RS00610 MMP_RS00615: MMP_RS00615 - tRNA-Asp, at 113,620 to 113,694 _RS00615 MMP_RS00620: MMP_RS00620 - 4Fe-4S binding protein, at 113,747 to 114,364 _RS00620 MMP_RS00625: MMP_RS00625 - hypothetical protein, at 114,454 to 115,014 _RS00625 MMP_RS00630: MMP_RS00630 - ECF transporter S component, at 115,117 to 115,677 _RS00630 MMP_RS00635: MMP_RS00635 - energy-coupling factor transporter transmembrane protein EcfT, at 115,687 to 116,211 _RS00635 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 113.770 kb on - strandat 113.806 kb on - strandat 113.886 kb on - strand, within MMP_RS00620at 113.911 kb on + strand, within MMP_RS00620at 113.953 kb on + strand, within MMP_RS00620at 113.986 kb on + strand, within MMP_RS00620at 114.042 kb on - strand, within MMP_RS00620at 114.043 kb on + strand, within MMP_RS00620at 114.055 kb on + strand, within MMP_RS00620at 114.122 kb on + strand, within MMP_RS00620at 114.122 kb on + strand, within MMP_RS00620at 114.142 kb on - strand, within MMP_RS00620at 114.229 kb on - strand, within MMP_RS00620at 114.261 kb on - strand, within MMP_RS00620at 114.304 kb on + strandat 114.346 kb on + strandat 114.402 kb on - strandat 114.403 kb on + strandat 114.405 kb on + strandat 114.406 kb on - strandat 114.407 kb on + strandat 114.409 kb on - strandat 114.486 kb on + strandat 114.493 kb on + strandat 114.503 kb on - strandat 114.520 kb on - strand, within MMP_RS00625at 114.525 kb on + strand, within MMP_RS00625at 114.533 kb on - strand, within MMP_RS00625at 114.534 kb on + strand, within MMP_RS00625at 114.535 kb on - strand, within MMP_RS00625at 114.536 kb on + strand, within MMP_RS00625at 114.808 kb on - strand, within MMP_RS00625at 114.880 kb on + strand, within MMP_RS00625at 114.963 kb on + strandat 114.963 kb on + strandat 114.964 kb on - strandat 114.965 kb on + strandat 114.965 kb on + strandat 115.069 kb on + strandat 115.073 kb on + strandat 115.073 kb on + strandat 115.135 kb on - strandat 115.135 kb on - strandat 115.136 kb on + strandat 115.326 kb on - strand, within MMP_RS00630at 115.344 kb on + strand, within MMP_RS00630at 115.615 kb on - strand, within MMP_RS00630at 115.616 kb on + strand, within MMP_RS00630at 115.616 kb on + strand, within MMP_RS00630at 115.618 kb on - strand, within MMP_RS00630at 115.618 kb on - strand, within MMP_RS00630at 115.619 kb on + strand, within MMP_RS00630at 115.676 kb on + strandat 115.851 kb on + strand, within MMP_RS00635at 115.890 kb on - strand, within MMP_RS00635at 115.901 kb on + strand, within MMP_RS00635at 115.916 kb on + strand, within MMP_RS00635

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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113,770 - +1.1
113,806 - +2.4
113,886 - MMP_RS00620 0.22 +0.4
113,911 + MMP_RS00620 0.27 +0.1
113,953 + MMP_RS00620 0.33 -2.3
113,986 + MMP_RS00620 0.39 -3.1
114,042 - MMP_RS00620 0.48 +0.8
114,043 + MMP_RS00620 0.48 +0.3
114,055 + MMP_RS00620 0.50 -0.7
114,122 + MMP_RS00620 0.61 +0.5
114,122 + MMP_RS00620 0.61 -0.5
114,142 - MMP_RS00620 0.64 +1.4
114,229 - MMP_RS00620 0.78 +0.2
114,261 - MMP_RS00620 0.83 +1.2
114,304 + -0.3
114,346 + +1.0
114,402 - +2.0
114,403 + -3.1
114,405 + -1.2
114,406 - +1.1
114,407 + -0.3
114,409 - -0.8
114,486 + -0.2
114,493 + +0.8
114,503 - +2.6
114,520 - MMP_RS00625 0.12 +0.2
114,525 + MMP_RS00625 0.13 -0.8
114,533 - MMP_RS00625 0.14 -0.4
114,534 + MMP_RS00625 0.14 +0.0
114,535 - MMP_RS00625 0.14 -1.5
114,536 + MMP_RS00625 0.15 -0.4
114,808 - MMP_RS00625 0.63 -0.1
114,880 + MMP_RS00625 0.76 -1.1
114,963 + -0.3
114,963 + +1.7
114,964 - +0.8
114,965 + -1.6
114,965 + +0.8
115,069 + -0.3
115,073 + -0.5
115,073 + -0.9
115,135 - -0.2
115,135 - -1.8
115,136 + -0.7
115,326 - MMP_RS00630 0.37 -0.8
115,344 + MMP_RS00630 0.40 -0.3
115,615 - MMP_RS00630 0.89 -0.4
115,616 + MMP_RS00630 0.89 -0.9
115,616 + MMP_RS00630 0.89 -0.0
115,618 - MMP_RS00630 0.89 -2.9
115,618 - MMP_RS00630 0.89 +1.5
115,619 + MMP_RS00630 0.89 -1.2
115,676 + +1.4
115,851 + MMP_RS00635 0.31 +1.2
115,890 - MMP_RS00635 0.39 -2.7
115,901 + MMP_RS00635 0.41 -0.8
115,916 + MMP_RS00635 0.44 -0.7

Or see this region's nucleotide sequence