Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00315

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00310 and MMP_RS00315 are separated by 130 nucleotidesMMP_RS00315 and MMP_RS00320 overlap by 4 nucleotidesMMP_RS00320 and MMP_RS00325 are separated by 13 nucleotides MMP_RS00310: MMP_RS00310 - CBS domain-containing protein, at 67,114 to 68,025 _RS00310 MMP_RS00315: MMP_RS00315 - Nif3-like dinuclear metal center hexameric protein, at 68,156 to 68,896 _RS00315 MMP_RS00320: MMP_RS00320 - class I SAM-dependent methyltransferase, at 68,893 to 69,501 _RS00320 MMP_RS00325: MMP_RS00325 - RNA-binding protein, at 69,515 to 69,994 _RS00325 Position (kb) 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 67.162 kb on - strandat 67.163 kb on + strandat 67.174 kb on + strandat 67.269 kb on + strand, within MMP_RS00310at 67.295 kb on - strand, within MMP_RS00310at 67.297 kb on - strand, within MMP_RS00310at 67.369 kb on - strand, within MMP_RS00310at 67.370 kb on + strand, within MMP_RS00310at 67.439 kb on + strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.477 kb on + strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.496 kb on + strand, within MMP_RS00310at 67.544 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.569 kb on - strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.815 kb on + strand, within MMP_RS00310at 67.834 kb on + strand, within MMP_RS00310at 67.883 kb on + strand, within MMP_RS00310at 67.996 kb on - strandat 68.011 kb on - strandat 68.011 kb on - strandat 68.017 kb on + strandat 68.017 kb on + strandat 68.026 kb on + strandat 68.049 kb on - strandat 68.060 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.075 kb on + strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.077 kb on + strandat 68.079 kb on + strandat 68.099 kb on - strandat 68.103 kb on + strandat 68.109 kb on + strandat 68.198 kb on - strandat 68.202 kb on - strandat 68.271 kb on + strand, within MMP_RS00315at 68.339 kb on - strand, within MMP_RS00315at 68.343 kb on - strand, within MMP_RS00315at 68.343 kb on - strand, within MMP_RS00315at 68.343 kb on - strand, within MMP_RS00315at 68.613 kb on - strand, within MMP_RS00315at 68.711 kb on - strand, within MMP_RS00315at 68.711 kb on - strand, within MMP_RS00315at 68.754 kb on + strand, within MMP_RS00315at 69.287 kb on + strand, within MMP_RS00320at 69.302 kb on + strand, within MMP_RS00320at 69.446 kb on - strandat 69.447 kb on + strandat 69.448 kb on - strandat 69.454 kb on + strandat 69.749 kb on - strand, within MMP_RS00325at 69.750 kb on + strand, within MMP_RS00325

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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67,162 - +1.1
67,163 + +1.2
67,174 + -1.3
67,269 + MMP_RS00310 0.17 -0.7
67,295 - MMP_RS00310 0.20 +0.6
67,297 - MMP_RS00310 0.20 +2.1
67,369 - MMP_RS00310 0.28 -1.0
67,370 + MMP_RS00310 0.28 +0.9
67,439 + MMP_RS00310 0.36 +3.2
67,476 - MMP_RS00310 0.40 +1.8
67,476 - MMP_RS00310 0.40 -1.0
67,476 - MMP_RS00310 0.40 -1.0
67,476 - MMP_RS00310 0.40 +0.1
67,476 - MMP_RS00310 0.40 +3.5
67,477 + MMP_RS00310 0.40 +2.4
67,478 - MMP_RS00310 0.40 -0.6
67,478 - MMP_RS00310 0.40 +0.3
67,478 - MMP_RS00310 0.40 +1.5
67,479 + MMP_RS00310 0.40 -1.0
67,479 + MMP_RS00310 0.40 -0.8
67,479 + MMP_RS00310 0.40 -1.8
67,496 + MMP_RS00310 0.42 -3.2
67,544 + MMP_RS00310 0.47 +2.0
67,568 + MMP_RS00310 0.50 -2.5
67,568 + MMP_RS00310 0.50 -0.9
67,569 - MMP_RS00310 0.50 +1.9
67,570 + MMP_RS00310 0.50 +0.4
67,570 + MMP_RS00310 0.50 -0.8
67,815 + MMP_RS00310 0.77 +1.6
67,834 + MMP_RS00310 0.79 -0.5
67,883 + MMP_RS00310 0.84 +2.6
67,996 - +1.1
68,011 - +0.3
68,011 - +0.4
68,017 + +0.5
68,017 + +4.5
68,026 + -0.8
68,049 - -1.1
68,060 - +1.6
68,074 - +1.6
68,074 - +1.3
68,074 - +0.8
68,074 - -2.4
68,075 + -1.2
68,076 - -0.8
68,076 - -1.5
68,076 - +0.6
68,076 - -0.4
68,077 + +3.4
68,079 + +1.0
68,099 - +1.2
68,103 + +1.6
68,109 + +3.8
68,198 - -0.8
68,202 - -2.1
68,271 + MMP_RS00315 0.16 -1.3
68,339 - MMP_RS00315 0.25 -1.8
68,343 - MMP_RS00315 0.25 -2.5
68,343 - MMP_RS00315 0.25 -0.4
68,343 - MMP_RS00315 0.25 -1.4
68,613 - MMP_RS00315 0.62 -1.3
68,711 - MMP_RS00315 0.75 -1.7
68,711 - MMP_RS00315 0.75 -3.0
68,754 + MMP_RS00315 0.81 -1.2
69,287 + MMP_RS00320 0.65 +2.5
69,302 + MMP_RS00320 0.67 +2.5
69,446 - +1.7
69,447 + +0.9
69,448 - +4.6
69,454 + +2.0
69,749 - MMP_RS00325 0.49 +1.4
69,750 + MMP_RS00325 0.49 +1.8

Or see this region's nucleotide sequence