Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00215 and MMP_RS00220 are separated by 20 nucleotides MMP_RS00220 and MMP_RS00225 are separated by 25 nucleotides
MMP_RS00215: MMP_RS00215 - AAA family ATPase, at 50,520 to 51,746
_RS00215
MMP_RS00220: MMP_RS00220 - GTP cyclohydrolase MptA, at 51,767 to 52,714
_RS00220
MMP_RS00225: MMP_RS00225 - ATP-grasp domain-containing protein, at 52,740 to 53,789
_RS00225
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 50.770 kb on + strand at 51.686 kb on + strand at 51.944 kb on + strand at 51.987 kb on - strand at 52.035 kb on - strand at 52.084 kb on + strand at 52.100 kb on - strand at 52.101 kb on + strand at 52.101 kb on + strand at 52.101 kb on + strand at 52.180 kb on + strand at 52.289 kb on + strand at 52.346 kb on + strand at 52.406 kb on - strand at 52.409 kb on + strand at 52.466 kb on - strand at 52.503 kb on - strand at 52.583 kb on - strand at 52.670 kb on + strand at 52.683 kb on - strand at 52.684 kb on + strand at 52.684 kb on + strand at 52.684 kb on + strand at 52.696 kb on - strand at 52.697 kb on + strand at 52.827 kb on - strand at 52.828 kb on + strand at 52.961 kb on - strand at 53.053 kb on - strand at 53.053 kb on - strand at 53.053 kb on - strand at 53.054 kb on + strand at 53.115 kb on - strand at 53.115 kb on - strand at 53.116 kb on + strand at 53.119 kb on - strand at 53.120 kb on + strand at 53.123 kb on + strand at 53.127 kb on + strand at 53.129 kb on - strand at 53.176 kb on - strand at 53.177 kb on + strand at 53.177 kb on + strand at 53.247 kb on + strand at 53.248 kb on - strand at 53.253 kb on - strand at 53.292 kb on - strand at 53.292 kb on - strand at 53.292 kb on - strand at 53.293 kb on + strand at 53.306 kb on - strand at 53.348 kb on - strand at 53.355 kb on + strand at 53.355 kb on + strand at 53.355 kb on + strand at 53.359 kb on + strand at 53.425 kb on - strand at 53.490 kb on - strand at 53.543 kb on + strand at 53.543 kb on + strand at 53.553 kb on - strand at 53.553 kb on - strand at 53.620 kb on - strand at 53.647 kb on + strand at 53.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 50,770 + -0.5 51,686 + +0.0 51,944 + -0.5 51,987 - -0.4 52,035 - -1.3 52,084 + -0.7 52,100 - +1.0 52,101 + -0.7 52,101 + -1.4 52,101 + +2.0 52,180 + +0.0 52,289 + -1.5 52,346 + -1.0 52,406 - -0.6 52,409 + +0.0 52,466 - +0.6 52,503 - -0.6 52,583 - -0.2 52,670 + -0.4 52,683 - +1.3 52,684 + +1.5 52,684 + +0.3 52,684 + +0.0 52,696 - -1.4 52,697 + -1.5 52,827 - -1.1 52,828 + -0.2 52,961 - +0.7 53,053 - +1.2 53,053 - +1.4 53,053 - +2.0 53,054 + -0.4 53,115 - -0.4 53,115 - -1.1 53,116 + +0.1 53,119 - +0.3 53,120 + -1.0 53,123 + +0.2 53,127 + +0.8 53,129 - +0.3 53,176 - -1.1 53,177 + -1.1 53,177 + -0.5 53,247 + -0.5 53,248 - +0.0 53,253 - +0.1 53,292 - +2.9 53,292 - +0.3 53,292 - +0.3 53,293 + +0.8 53,306 - -2.0 53,348 - +1.1 53,355 + +0.3 53,355 + +0.2 53,355 + -0.7 53,359 + -0.8 53,425 - -0.6 53,490 - +1.6 53,543 + -0.5 53,543 + -0.6 53,553 - +1.0 53,553 - +1.6 53,620 - +1.0 53,647 + +0.6 53,697 - +0.8
Or see this region's nucleotide sequence