Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00185

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00180 and MMP_RS00185 are separated by 229 nucleotidesMMP_RS00185 and MMP_RS00190 are separated by 72 nucleotides MMP_RS00180: MMP_RS00180 - 16S ribosomal RNA, at 40,485 to 41,951 _RS00180 MMP_RS00185: MMP_RS00185 - potassium channel protein, at 42,181 to 43,188 _RS00185 MMP_RS00190: MMP_RS00190 - cobyrinic acid a c-diamide synthase, at 43,261 to 44,712 _RS00190 Position (kb) 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 42.154 kb on + strandat 42.154 kb on + strandat 42.156 kb on + strandat 42.183 kb on + strandat 42.206 kb on + strandat 42.321 kb on - strand, within MMP_RS00185at 42.324 kb on - strand, within MMP_RS00185at 42.324 kb on - strand, within MMP_RS00185at 42.325 kb on + strand, within MMP_RS00185at 42.414 kb on + strand, within MMP_RS00185at 42.419 kb on - strand, within MMP_RS00185at 42.429 kb on - strand, within MMP_RS00185at 42.429 kb on - strand, within MMP_RS00185at 42.430 kb on + strand, within MMP_RS00185at 42.505 kb on + strand, within MMP_RS00185at 42.622 kb on + strand, within MMP_RS00185at 42.625 kb on - strand, within MMP_RS00185at 42.625 kb on - strand, within MMP_RS00185at 42.626 kb on + strand, within MMP_RS00185at 42.626 kb on + strand, within MMP_RS00185at 42.626 kb on + strand, within MMP_RS00185at 42.626 kb on + strand, within MMP_RS00185at 42.631 kb on + strand, within MMP_RS00185at 42.677 kb on + strand, within MMP_RS00185at 42.688 kb on - strand, within MMP_RS00185at 42.689 kb on + strand, within MMP_RS00185at 42.691 kb on - strand, within MMP_RS00185at 42.723 kb on - strand, within MMP_RS00185at 42.723 kb on - strand, within MMP_RS00185at 42.724 kb on + strand, within MMP_RS00185at 42.726 kb on + strand, within MMP_RS00185at 42.775 kb on + strand, within MMP_RS00185at 42.823 kb on - strand, within MMP_RS00185at 42.924 kb on + strand, within MMP_RS00185at 42.961 kb on + strand, within MMP_RS00185at 42.972 kb on - strand, within MMP_RS00185at 42.990 kb on - strand, within MMP_RS00185at 43.087 kb on - strand, within MMP_RS00185at 43.088 kb on + strandat 43.108 kb on + strandat 43.109 kb on - strandat 43.109 kb on - strandat 43.109 kb on - strandat 43.109 kb on - strandat 43.109 kb on - strandat 43.109 kb on - strandat 43.110 kb on + strandat 43.110 kb on + strandat 43.137 kb on - strandat 43.138 kb on + strandat 43.138 kb on + strandat 43.138 kb on + strandat 43.147 kb on - strandat 43.148 kb on + strandat 43.148 kb on + strandat 43.150 kb on - strandat 43.168 kb on + strandat 43.203 kb on - strandat 43.207 kb on - strandat 43.207 kb on - strandat 43.208 kb on + strandat 43.210 kb on + strandat 43.217 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.219 kb on - strandat 43.220 kb on + strandat 43.220 kb on + strandat 43.220 kb on + strandat 43.220 kb on + strandat 43.220 kb on + strandat 43.220 kb on + strandat 43.221 kb on - strandat 43.221 kb on - strandat 43.221 kb on - strandat 43.221 kb on - strandat 43.222 kb on + strandat 43.222 kb on + strandat 43.222 kb on + strandat 43.227 kb on + strandat 43.234 kb on + strandat 43.235 kb on - strandat 43.236 kb on + strandat 43.237 kb on - strandat 43.237 kb on - strandat 43.237 kb on - strandat 43.362 kb on + strandat 43.459 kb on - strandat 43.460 kb on + strandat 43.460 kb on + strandat 43.460 kb on + strandat 43.473 kb on + strandat 43.510 kb on + strandat 43.538 kb on - strandat 43.538 kb on - strandat 43.538 kb on - strandat 43.560 kb on + strandat 43.581 kb on + strandat 43.969 kb on + strandat 44.097 kb on - strandat 44.112 kb on + strandat 44.130 kb on - strandat 44.131 kb on + strandat 44.156 kb on - strandat 44.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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42,154 + +1.0
42,154 + +0.4
42,156 + +1.4
42,183 + -0.2
42,206 + -2.0
42,321 - MMP_RS00185 0.14 -0.6
42,324 - MMP_RS00185 0.14 -1.3
42,324 - MMP_RS00185 0.14 -1.4
42,325 + MMP_RS00185 0.14 -3.5
42,414 + MMP_RS00185 0.23 -0.9
42,419 - MMP_RS00185 0.24 -1.1
42,429 - MMP_RS00185 0.25 -0.7
42,429 - MMP_RS00185 0.25 -2.5
42,430 + MMP_RS00185 0.25 -1.6
42,505 + MMP_RS00185 0.32 -2.1
42,622 + MMP_RS00185 0.44 -3.8
42,625 - MMP_RS00185 0.44 -1.8
42,625 - MMP_RS00185 0.44 -2.1
42,626 + MMP_RS00185 0.44 -2.1
42,626 + MMP_RS00185 0.44 -3.6
42,626 + MMP_RS00185 0.44 -1.8
42,626 + MMP_RS00185 0.44 -1.0
42,631 + MMP_RS00185 0.45 -1.1
42,677 + MMP_RS00185 0.49 -2.2
42,688 - MMP_RS00185 0.50 -4.1
42,689 + MMP_RS00185 0.50 -1.8
42,691 - MMP_RS00185 0.51 -2.5
42,723 - MMP_RS00185 0.54 -2.0
42,723 - MMP_RS00185 0.54 -1.4
42,724 + MMP_RS00185 0.54 -1.0
42,726 + MMP_RS00185 0.54 -3.7
42,775 + MMP_RS00185 0.59 -1.5
42,823 - MMP_RS00185 0.64 -1.8
42,924 + MMP_RS00185 0.74 -1.7
42,961 + MMP_RS00185 0.77 -0.3
42,972 - MMP_RS00185 0.78 -0.3
42,990 - MMP_RS00185 0.80 -1.2
43,087 - MMP_RS00185 0.90 -1.8
43,088 + -1.9
43,108 + -0.7
43,109 - -0.9
43,109 - -3.1
43,109 - -2.0
43,109 - -0.8
43,109 - -2.9
43,109 - -0.7
43,110 + -1.9
43,110 + -4.4
43,137 - -0.2
43,138 + -2.7
43,138 + -0.9
43,138 + -2.8
43,147 - -1.9
43,148 + -2.3
43,148 + -4.0
43,150 - -2.2
43,168 + -1.7
43,203 - -1.9
43,207 - -0.2
43,207 - -1.8
43,208 + -0.9
43,210 + -1.1
43,217 - -2.8
43,219 - +0.5
43,219 - +0.7
43,219 - -1.0
43,219 - +1.0
43,219 - -0.7
43,219 - -0.1
43,219 - -0.0
43,219 - -1.3
43,219 - -0.5
43,220 + -1.4
43,220 + -1.2
43,220 + -2.1
43,220 + -0.2
43,220 + -2.0
43,220 + +0.2
43,221 - -2.0
43,221 - +0.1
43,221 - -2.0
43,221 - -2.8
43,222 + -0.2
43,222 + +0.6
43,222 + -2.0
43,227 + +0.6
43,234 + -0.4
43,235 - -1.1
43,236 + -0.4
43,237 - -0.9
43,237 - +0.0
43,237 - -1.0
43,362 + -1.1
43,459 - -1.0
43,460 + -0.2
43,460 + -1.0
43,460 + +0.5
43,473 + -1.8
43,510 + -0.1
43,538 - -1.5
43,538 - -0.7
43,538 - -1.2
43,560 + +0.5
43,581 + -1.0
43,969 + -1.0
44,097 - +2.2
44,112 + +0.6
44,130 - -0.7
44,131 + +1.0
44,156 - -0.7
44,157 + -0.7

Or see this region's nucleotide sequence