Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00180 and MMP_RS00185 are separated by 229 nucleotides MMP_RS00185 and MMP_RS00190 are separated by 72 nucleotides
MMP_RS00180: MMP_RS00180 - 16S ribosomal RNA, at 40,485 to 41,951
_RS00180
MMP_RS00185: MMP_RS00185 - potassium channel protein, at 42,181 to 43,188
_RS00185
MMP_RS00190: MMP_RS00190 - cobyrinic acid a c-diamide synthase, at 43,261 to 44,712
_RS00190
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.154 kb on + strand at 42.154 kb on + strand at 42.156 kb on + strand at 42.183 kb on + strand at 42.206 kb on + strand at 42.321 kb on - strand, within MMP_RS00185 at 42.324 kb on - strand, within MMP_RS00185 at 42.324 kb on - strand, within MMP_RS00185 at 42.325 kb on + strand, within MMP_RS00185 at 42.414 kb on + strand, within MMP_RS00185 at 42.419 kb on - strand, within MMP_RS00185 at 42.429 kb on - strand, within MMP_RS00185 at 42.429 kb on - strand, within MMP_RS00185 at 42.430 kb on + strand, within MMP_RS00185 at 42.505 kb on + strand, within MMP_RS00185 at 42.622 kb on + strand, within MMP_RS00185 at 42.625 kb on - strand, within MMP_RS00185 at 42.625 kb on - strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.626 kb on + strand, within MMP_RS00185 at 42.631 kb on + strand, within MMP_RS00185 at 42.677 kb on + strand, within MMP_RS00185 at 42.688 kb on - strand, within MMP_RS00185 at 42.689 kb on + strand, within MMP_RS00185 at 42.691 kb on - strand, within MMP_RS00185 at 42.723 kb on - strand, within MMP_RS00185 at 42.723 kb on - strand, within MMP_RS00185 at 42.724 kb on + strand, within MMP_RS00185 at 42.726 kb on + strand, within MMP_RS00185 at 42.775 kb on + strand, within MMP_RS00185 at 42.823 kb on - strand, within MMP_RS00185 at 42.924 kb on + strand, within MMP_RS00185 at 42.961 kb on + strand, within MMP_RS00185 at 42.972 kb on - strand, within MMP_RS00185 at 42.990 kb on - strand, within MMP_RS00185 at 43.087 kb on - strand, within MMP_RS00185 at 43.088 kb on + strand at 43.108 kb on + strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.109 kb on - strand at 43.110 kb on + strand at 43.110 kb on + strand at 43.137 kb on - strand at 43.138 kb on + strand at 43.138 kb on + strand at 43.138 kb on + strand at 43.147 kb on - strand at 43.148 kb on + strand at 43.148 kb on + strand at 43.150 kb on - strand at 43.168 kb on + strand at 43.203 kb on - strand at 43.207 kb on - strand at 43.207 kb on - strand at 43.208 kb on + strand at 43.210 kb on + strand at 43.217 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.220 kb on + strand at 43.221 kb on - strand at 43.221 kb on - strand at 43.221 kb on - strand at 43.221 kb on - strand at 43.222 kb on + strand at 43.222 kb on + strand at 43.222 kb on + strand at 43.227 kb on + strand at 43.234 kb on + strand at 43.235 kb on - strand at 43.236 kb on + strand at 43.237 kb on - strand at 43.237 kb on - strand at 43.237 kb on - strand at 43.362 kb on + strand at 43.459 kb on - strand at 43.460 kb on + strand at 43.460 kb on + strand at 43.460 kb on + strand at 43.473 kb on + strand at 43.510 kb on + strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.560 kb on + strand at 43.581 kb on + strand at 43.969 kb on + strand at 44.097 kb on - strand at 44.112 kb on + strand at 44.130 kb on - strand at 44.131 kb on + strand at 44.156 kb on - strand at 44.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 42,154 + +1.0 42,154 + +0.4 42,156 + +1.4 42,183 + -0.2 42,206 + -2.0 42,321 - MMP_RS00185 0.14 -0.6 42,324 - MMP_RS00185 0.14 -1.3 42,324 - MMP_RS00185 0.14 -1.4 42,325 + MMP_RS00185 0.14 -3.5 42,414 + MMP_RS00185 0.23 -0.9 42,419 - MMP_RS00185 0.24 -1.1 42,429 - MMP_RS00185 0.25 -0.7 42,429 - MMP_RS00185 0.25 -2.5 42,430 + MMP_RS00185 0.25 -1.6 42,505 + MMP_RS00185 0.32 -2.1 42,622 + MMP_RS00185 0.44 -3.8 42,625 - MMP_RS00185 0.44 -1.8 42,625 - MMP_RS00185 0.44 -2.1 42,626 + MMP_RS00185 0.44 -2.1 42,626 + MMP_RS00185 0.44 -3.6 42,626 + MMP_RS00185 0.44 -1.8 42,626 + MMP_RS00185 0.44 -1.0 42,631 + MMP_RS00185 0.45 -1.1 42,677 + MMP_RS00185 0.49 -2.2 42,688 - MMP_RS00185 0.50 -4.1 42,689 + MMP_RS00185 0.50 -1.8 42,691 - MMP_RS00185 0.51 -2.5 42,723 - MMP_RS00185 0.54 -2.0 42,723 - MMP_RS00185 0.54 -1.4 42,724 + MMP_RS00185 0.54 -1.0 42,726 + MMP_RS00185 0.54 -3.7 42,775 + MMP_RS00185 0.59 -1.5 42,823 - MMP_RS00185 0.64 -1.8 42,924 + MMP_RS00185 0.74 -1.7 42,961 + MMP_RS00185 0.77 -0.3 42,972 - MMP_RS00185 0.78 -0.3 42,990 - MMP_RS00185 0.80 -1.2 43,087 - MMP_RS00185 0.90 -1.8 43,088 + -1.9 43,108 + -0.7 43,109 - -0.9 43,109 - -3.1 43,109 - -2.0 43,109 - -0.8 43,109 - -2.9 43,109 - -0.7 43,110 + -1.9 43,110 + -4.4 43,137 - -0.2 43,138 + -2.7 43,138 + -0.9 43,138 + -2.8 43,147 - -1.9 43,148 + -2.3 43,148 + -4.0 43,150 - -2.2 43,168 + -1.7 43,203 - -1.9 43,207 - -0.2 43,207 - -1.8 43,208 + -0.9 43,210 + -1.1 43,217 - -2.8 43,219 - +0.5 43,219 - +0.7 43,219 - -1.0 43,219 - +1.0 43,219 - -0.7 43,219 - -0.1 43,219 - -0.0 43,219 - -1.3 43,219 - -0.5 43,220 + -1.4 43,220 + -1.2 43,220 + -2.1 43,220 + -0.2 43,220 + -2.0 43,220 + +0.2 43,221 - -2.0 43,221 - +0.1 43,221 - -2.0 43,221 - -2.8 43,222 + -0.2 43,222 + +0.6 43,222 + -2.0 43,227 + +0.6 43,234 + -0.4 43,235 - -1.1 43,236 + -0.4 43,237 - -0.9 43,237 - +0.0 43,237 - -1.0 43,362 + -1.1 43,459 - -1.0 43,460 + -0.2 43,460 + -1.0 43,460 + +0.5 43,473 + -1.8 43,510 + -0.1 43,538 - -1.5 43,538 - -0.7 43,538 - -1.2 43,560 + +0.5 43,581 + -1.0 43,969 + -1.0 44,097 - +2.2 44,112 + +0.6 44,130 - -0.7 44,131 + +1.0 44,156 - -0.7 44,157 + -0.7
Or see this region's nucleotide sequence