Experiment: McCas_formate_complete NO 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03770 and MMP_RS03775 are separated by 104 nucleotides MMP_RS03775 and MMP_RS03780 are separated by 145 nucleotides MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides MMP_RS03785 and MMP_RS03790 are separated by 139 nucleotides MMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708
_RS03775
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317
_RS03790
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
Position (kb) 714
715
716 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 713.939 kb on + strand at 713.962 kb on - strand at 714.010 kb on - strand at 714.011 kb on + strand at 714.075 kb on - strand at 714.228 kb on - strand, within MMP_RS03775 at 714.386 kb on - strand, within MMP_RS03775 at 714.403 kb on - strand, within MMP_RS03775 at 714.404 kb on + strand, within MMP_RS03775 at 714.660 kb on + strand at 714.816 kb on - strand at 714.817 kb on + strand at 714.859 kb on - strand at 714.861 kb on - strand at 714.877 kb on + strand at 714.887 kb on - strand at 714.890 kb on - strand at 714.923 kb on + strand, within MMP_RS03780 at 714.942 kb on - strand, within MMP_RS03780 at 714.949 kb on - strand, within MMP_RS03780 at 715.023 kb on - strand, within MMP_RS03780 at 715.027 kb on - strand, within MMP_RS03780 at 715.090 kb on - strand, within MMP_RS03780 at 715.122 kb on - strand, within MMP_RS03780 at 715.184 kb on + strand, within MMP_RS03780 at 715.216 kb on + strand, within MMP_RS03780 at 715.254 kb on - strand, within MMP_RS03780 at 715.341 kb on - strand at 715.367 kb on - strand at 715.461 kb on - strand, within MMP_RS03785 at 715.573 kb on + strand, within MMP_RS03785 at 715.614 kb on - strand, within MMP_RS03785 at 715.735 kb on + strand at 715.780 kb on - strand at 715.794 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.821 kb on - strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.824 kb on + strand at 715.870 kb on - strand at 715.892 kb on - strand at 715.893 kb on + strand at 716.093 kb on - strand, within MMP_RS03790 at 716.114 kb on - strand, within MMP_RS03790 at 716.140 kb on + strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.141 kb on + strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.144 kb on - strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.165 kb on + strand, within MMP_RS03790 at 716.206 kb on + strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.258 kb on - strand, within MMP_RS03790 at 716.259 kb on + strand, within MMP_RS03790 at 716.326 kb on - strand at 716.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete NO 0.025 mM remove 713,939 + -3.1 713,962 - -4.4 714,010 - -5.4 714,011 + -1.7 714,075 - -3.2 714,228 - MMP_RS03775 0.29 -3.2 714,386 - MMP_RS03775 0.53 -3.8 714,403 - MMP_RS03775 0.55 -4.3 714,404 + MMP_RS03775 0.55 -4.2 714,660 + -1.9 714,816 - -3.8 714,817 + -3.8 714,859 - -2.9 714,861 - -5.6 714,877 + -3.4 714,887 - -5.4 714,890 - -3.5 714,923 + MMP_RS03780 0.13 -1.6 714,942 - MMP_RS03780 0.17 -5.3 714,949 - MMP_RS03780 0.18 -6.1 715,023 - MMP_RS03780 0.32 -3.9 715,027 - MMP_RS03780 0.33 -3.4 715,090 - MMP_RS03780 0.45 -1.7 715,122 - MMP_RS03780 0.51 -5.2 715,184 + MMP_RS03780 0.62 -5.1 715,216 + MMP_RS03780 0.69 -3.5 715,254 - MMP_RS03780 0.76 -5.4 715,341 - -4.6 715,367 - -1.7 715,461 - MMP_RS03785 0.18 -0.4 715,573 + MMP_RS03785 0.50 -0.5 715,614 - MMP_RS03785 0.62 -0.5 715,735 + +1.8 715,780 - -0.4 715,794 - -0.2 715,798 - +0.5 715,798 - +0.8 715,798 - +0.3 715,821 - +1.4 715,822 + +0.3 715,822 + +0.2 715,822 + -0.2 715,822 + +0.6 715,824 + +1.0 715,870 - +1.2 715,892 - +0.2 715,893 + +0.0 716,093 - MMP_RS03790 0.48 +0.4 716,114 - MMP_RS03790 0.53 +1.0 716,140 + MMP_RS03790 0.59 -0.2 716,140 - MMP_RS03790 0.59 +1.3 716,140 - MMP_RS03790 0.59 +1.1 716,141 + MMP_RS03790 0.59 -0.5 716,142 - MMP_RS03790 0.60 -1.0 716,142 - MMP_RS03790 0.60 +0.6 716,144 - MMP_RS03790 0.60 +1.1 716,145 + MMP_RS03790 0.60 +0.3 716,145 + MMP_RS03790 0.60 +0.4 716,145 + MMP_RS03790 0.60 +0.2 716,165 + MMP_RS03790 0.65 +0.9 716,206 + MMP_RS03790 0.74 +0.5 716,252 - MMP_RS03790 0.85 -0.0 716,252 - MMP_RS03790 0.85 +1.2 716,258 - MMP_RS03790 0.86 +0.9 716,259 + MMP_RS03790 0.86 +0.2 716,326 - +0.4 716,350 - +0.1
Or see this region's nucleotide sequence