Experiment: McCas_formate_complete NO 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03770 and MMP_RS03775 are separated by 104 nucleotides MMP_RS03775 and MMP_RS03780 are separated by 145 nucleotides MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708
_RS03775
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
Position (kb) 714
715 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 713.064 kb on - strand, within MMP_RS03770 at 713.067 kb on + strand, within MMP_RS03770 at 713.153 kb on - strand, within MMP_RS03770 at 713.156 kb on + strand, within MMP_RS03770 at 713.234 kb on - strand, within MMP_RS03770 at 713.235 kb on + strand, within MMP_RS03770 at 713.281 kb on - strand, within MMP_RS03770 at 713.286 kb on + strand, within MMP_RS03770 at 713.853 kb on - strand at 713.939 kb on + strand at 713.962 kb on - strand at 714.010 kb on - strand at 714.011 kb on + strand at 714.075 kb on - strand at 714.228 kb on - strand, within MMP_RS03775 at 714.386 kb on - strand, within MMP_RS03775 at 714.403 kb on - strand, within MMP_RS03775 at 714.404 kb on + strand, within MMP_RS03775 at 714.660 kb on + strand at 714.816 kb on - strand at 714.817 kb on + strand at 714.859 kb on - strand at 714.861 kb on - strand at 714.877 kb on + strand at 714.887 kb on - strand at 714.890 kb on - strand at 714.923 kb on + strand, within MMP_RS03780 at 714.942 kb on - strand, within MMP_RS03780 at 714.949 kb on - strand, within MMP_RS03780 at 715.023 kb on - strand, within MMP_RS03780 at 715.027 kb on - strand, within MMP_RS03780 at 715.090 kb on - strand, within MMP_RS03780 at 715.122 kb on - strand, within MMP_RS03780 at 715.184 kb on + strand, within MMP_RS03780 at 715.216 kb on + strand, within MMP_RS03780 at 715.254 kb on - strand, within MMP_RS03780 at 715.341 kb on - strand at 715.367 kb on - strand at 715.461 kb on - strand, within MMP_RS03785 at 715.573 kb on + strand, within MMP_RS03785 at 715.614 kb on - strand, within MMP_RS03785
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete NO 0.025 mM remove 713,064 - MMP_RS03770 0.48 -3.5 713,067 + MMP_RS03770 0.48 -6.0 713,153 - MMP_RS03770 0.53 -6.2 713,156 + MMP_RS03770 0.53 -3.2 713,234 - MMP_RS03770 0.58 -5.0 713,235 + MMP_RS03770 0.58 -5.4 713,281 - MMP_RS03770 0.61 -4.4 713,286 + MMP_RS03770 0.61 -4.3 713,853 - -6.2 713,939 + -3.1 713,962 - -4.4 714,010 - -5.4 714,011 + -1.7 714,075 - -3.2 714,228 - MMP_RS03775 0.29 -3.2 714,386 - MMP_RS03775 0.53 -3.8 714,403 - MMP_RS03775 0.55 -4.3 714,404 + MMP_RS03775 0.55 -4.2 714,660 + -1.9 714,816 - -3.8 714,817 + -3.8 714,859 - -2.9 714,861 - -5.6 714,877 + -3.4 714,887 - -5.4 714,890 - -3.5 714,923 + MMP_RS03780 0.13 -1.6 714,942 - MMP_RS03780 0.17 -5.3 714,949 - MMP_RS03780 0.18 -6.1 715,023 - MMP_RS03780 0.32 -3.9 715,027 - MMP_RS03780 0.33 -3.4 715,090 - MMP_RS03780 0.45 -1.7 715,122 - MMP_RS03780 0.51 -5.2 715,184 + MMP_RS03780 0.62 -5.1 715,216 + MMP_RS03780 0.69 -3.5 715,254 - MMP_RS03780 0.76 -5.4 715,341 - -4.6 715,367 - -1.7 715,461 - MMP_RS03785 0.18 -0.4 715,573 + MMP_RS03785 0.50 -0.5 715,614 - MMP_RS03785 0.62 -0.5
Or see this region's nucleotide sequence