Experiment: McCas_formate_complete NO 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03755 and MMP_RS03760 are separated by 383 nucleotides MMP_RS03760 and MMP_RS03765 are separated by 37 nucleotides MMP_RS03765 and MMP_RS03770 are separated by 252 nucleotides
MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851
_RS03755
MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585
_RS03760
MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030
_RS03765
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
Position (kb) 711
712
713 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 710.636 kb on - strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.653 kb on - strand, within MMP_RS03755 at 710.750 kb on + strand, within MMP_RS03755 at 710.767 kb on - strand, within MMP_RS03755 at 710.783 kb on - strand, within MMP_RS03755 at 710.784 kb on + strand, within MMP_RS03755 at 710.818 kb on + strand at 710.831 kb on - strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.875 kb on - strand at 710.875 kb on - strand at 710.942 kb on + strand at 711.055 kb on - strand at 711.055 kb on - strand at 711.082 kb on - strand at 711.086 kb on + strand at 711.088 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.094 kb on - strand at 711.202 kb on - strand at 711.202 kb on - strand at 711.205 kb on + strand at 711.255 kb on + strand at 711.342 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.373 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.412 kb on - strand, within MMP_RS03760 at 711.427 kb on - strand, within MMP_RS03760 at 711.435 kb on + strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.566 kb on + strand at 711.569 kb on - strand at 711.598 kb on - strand at 711.598 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.633 kb on - strand at 711.633 kb on - strand at 711.690 kb on - strand, within MMP_RS03765 at 711.868 kb on - strand, within MMP_RS03765 at 711.870 kb on - strand, within MMP_RS03765 at 711.873 kb on - strand, within MMP_RS03765 at 711.893 kb on - strand, within MMP_RS03765 at 711.893 kb on - strand, within MMP_RS03765 at 711.960 kb on - strand, within MMP_RS03765 at 711.984 kb on - strand, within MMP_RS03765 at 711.993 kb on - strand at 712.021 kb on - strand at 712.044 kb on + strand at 712.155 kb on + strand at 712.380 kb on - strand at 712.413 kb on - strand at 712.431 kb on - strand at 712.432 kb on + strand at 712.721 kb on + strand, within MMP_RS03770 at 712.723 kb on - strand, within MMP_RS03770 at 712.755 kb on + strand, within MMP_RS03770 at 712.860 kb on - strand, within MMP_RS03770 at 712.901 kb on + strand, within MMP_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete NO 0.025 mM remove 710,636 - MMP_RS03755 0.60 +0.2 710,636 - MMP_RS03755 0.60 -0.3 710,637 + MMP_RS03755 0.60 -0.2 710,637 + MMP_RS03755 0.60 +0.1 710,643 - MMP_RS03755 0.61 -0.0 710,643 - MMP_RS03755 0.61 +0.6 710,643 - MMP_RS03755 0.61 +0.7 710,643 - MMP_RS03755 0.61 -1.6 710,644 + MMP_RS03755 0.61 -0.2 710,644 + MMP_RS03755 0.61 +0.1 710,653 - MMP_RS03755 0.63 +0.2 710,750 + MMP_RS03755 0.81 +0.5 710,767 - MMP_RS03755 0.84 -0.8 710,783 - MMP_RS03755 0.87 +0.4 710,784 + MMP_RS03755 0.87 +0.8 710,818 + -0.3 710,831 - -0.0 710,832 + +0.8 710,832 + +0.4 710,832 + -1.4 710,875 - -0.0 710,875 - -0.1 710,942 + +0.1 711,055 - +0.4 711,055 - -0.6 711,082 - +1.0 711,086 + -1.0 711,088 - -0.0 711,092 - +1.2 711,092 - -0.1 711,092 - +0.4 711,094 - +0.7 711,202 - -2.7 711,202 - -3.6 711,205 + -2.5 711,255 + -4.7 711,342 - MMP_RS03760 0.30 -4.9 711,371 - MMP_RS03760 0.39 -6.3 711,371 - MMP_RS03760 0.39 -1.2 711,371 - MMP_RS03760 0.39 -5.1 711,371 - MMP_RS03760 0.39 -7.0 711,372 + MMP_RS03760 0.39 -6.9 711,372 + MMP_RS03760 0.39 -1.7 711,372 + MMP_RS03760 0.39 -5.4 711,372 + MMP_RS03760 0.39 -1.7 711,372 + MMP_RS03760 0.39 -4.3 711,372 + MMP_RS03760 0.39 -3.6 711,372 + MMP_RS03760 0.39 -3.6 711,373 - MMP_RS03760 0.39 -4.2 711,402 - MMP_RS03760 0.48 -5.0 711,402 - MMP_RS03760 0.48 -5.4 711,408 - MMP_RS03760 0.49 -3.5 711,408 - MMP_RS03760 0.49 -3.6 711,412 - MMP_RS03760 0.50 -6.8 711,427 - MMP_RS03760 0.55 -3.9 711,435 + MMP_RS03760 0.57 -3.2 711,444 - MMP_RS03760 0.60 -4.4 711,444 - MMP_RS03760 0.60 -4.9 711,566 + -4.3 711,569 - -1.8 711,598 - -2.8 711,598 - -2.9 711,602 - -6.8 711,602 - -5.2 711,602 - -2.2 711,633 - -5.2 711,633 - -5.9 711,690 - MMP_RS03765 0.16 -3.4 711,868 - MMP_RS03765 0.60 -2.0 711,870 - MMP_RS03765 0.61 -5.3 711,873 - MMP_RS03765 0.61 -6.1 711,893 - MMP_RS03765 0.66 -6.8 711,893 - MMP_RS03765 0.66 -4.1 711,960 - MMP_RS03765 0.83 -3.5 711,984 - MMP_RS03765 0.88 -5.2 711,993 - -2.1 712,021 - -2.7 712,044 + -0.5 712,155 + -5.7 712,380 - -4.6 712,413 - -6.8 712,431 - -5.4 712,432 + -5.4 712,721 + MMP_RS03770 0.27 -3.4 712,723 - MMP_RS03770 0.27 -5.3 712,755 + MMP_RS03770 0.29 -3.5 712,860 - MMP_RS03770 0.35 -3.2 712,901 + MMP_RS03770 0.38 -4.5
Or see this region's nucleotide sequence