Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11730

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Nickel (II) chloride 424 uM
2,599,753	+		LRK54_RS11720	0.65	+0.3
2,599,753	+		LRK54_RS11720	0.65	-0.2
2,599,753	+		LRK54_RS11720	0.65	-0.5
2,599,753	+		LRK54_RS11720	0.65	+0.8
2,599,753	+		LRK54_RS11720	0.65	+0.4
2,599,753	+		LRK54_RS11720	0.65	+0.8
2,599,753	+		LRK54_RS11720	0.65	-1.1
2,599,753	+		LRK54_RS11720	0.65	-1.5
2,599,753	+		LRK54_RS11720	0.65	-0.7
2,599,753	+		LRK54_RS11720	0.65	+1.2
2,599,753	+		LRK54_RS11720	0.65	-0.3
2,599,753	+		LRK54_RS11720	0.65	-2.4
2,599,754	-		LRK54_RS11720	0.65	-0.4
2,599,754	-		LRK54_RS11720	0.65	-1.1
2,599,754	-		LRK54_RS11720	0.65	-0.2
2,599,754	-		LRK54_RS11720	0.65	+0.5
2,599,754	-		LRK54_RS11720	0.65	-0.3
2,599,754	-		LRK54_RS11720	0.65	-0.2
2,599,954	+		LRK54_RS11720	0.80	-0.7
2,599,954	+		LRK54_RS11720	0.80	+3.0
2,599,954	+		LRK54_RS11720	0.80	+1.0
2,599,954	+		LRK54_RS11720	0.80	+0.4
2,599,955	-		LRK54_RS11720	0.80	+0.8
2,599,955	-		LRK54_RS11720	0.80	-1.3
2,599,955	-		LRK54_RS11720	0.80	-0.9
2,599,955	-		LRK54_RS11720	0.80	-0.3
2,599,968	+		LRK54_RS11720	0.81	-0.6
2,599,968	+		LRK54_RS11720	0.81	-0.5
2,599,968	+		LRK54_RS11720	0.81	-0.0
2,599,968	+		LRK54_RS11720	0.81	-0.0
2,599,968	+		LRK54_RS11720	0.81	-1.4
2,599,968	+		LRK54_RS11720	0.81	-0.3
2,599,968	+		LRK54_RS11720	0.81	+0.5
2,599,968	+		LRK54_RS11720	0.81	+0.2
2,599,968	+		LRK54_RS11720	0.81	+2.3
2,599,968	+		LRK54_RS11720	0.81	-0.3
2,599,968	+		LRK54_RS11720	0.81	+1.0
2,599,969	-		LRK54_RS11720	0.81	-0.6
2,599,969	-		LRK54_RS11720	0.81	-0.0
2,599,969	-		LRK54_RS11720	0.81	-0.6
2,599,969	-		LRK54_RS11720	0.81	-1.6
2,599,969	-		LRK54_RS11720	0.81	-1.4
2,599,969	-		LRK54_RS11720	0.81	-0.2
2,600,002	+		LRK54_RS11720	0.83	-1.7
2,600,002	+		LRK54_RS11720	0.83	-1.5
2,600,002	+		LRK54_RS11720	0.83	-0.9
2,600,002	+		LRK54_RS11720	0.83	-0.8
2,600,002	+		LRK54_RS11720	0.83	-0.8
2,600,002	+		LRK54_RS11720	0.83	-2.7
2,600,003	-		LRK54_RS11720	0.84	-0.3
2,600,003	-		LRK54_RS11720	0.84	-2.5
2,600,003	-		LRK54_RS11720	0.84	-2.2
2,600,003	-		LRK54_RS11720	0.84	-1.8
2,600,003	-		LRK54_RS11720	0.84	+0.2
2,600,003	-		LRK54_RS11720	0.84	-0.8
2,600,003	-		LRK54_RS11720	0.84	-0.7
2,600,003	-		LRK54_RS11720	0.84	-0.9
2,600,075	-		LRK54_RS11720	0.89	-2.7
2,600,194	+				-0.3
2,600,194	+				-0.5
2,600,194	+				+0.7
2,600,194	+				-0.3
2,600,194	+				-1.7
2,600,194	+				-1.3
2,600,194	+				-1.2
2,600,194	+				-1.3
2,600,194	+				+0.3
2,600,195	-				+1.5
2,600,195	-				-0.3
2,600,195	-				-0.9
2,600,195	-				-1.4
2,600,195	-				-0.8
2,600,195	-				+3.0
2,600,195	-				-0.4
2,600,195	-				+0.4
2,600,195	-				-1.7
2,600,195	-				-0.0
2,600,195	-				+1.0
2,600,195	-				+2.3
2,600,294	+				-0.9
2,600,294	+				-0.4
2,600,294	+				-0.8
2,600,294	+				-0.3
2,600,294	+				-0.8
2,600,294	+				+0.1
2,600,294	+				-0.7
2,600,294	+				-1.8
2,600,294	+				-2.2
2,600,295	-				-2.1
2,600,295	-				-1.5
2,600,295	-				-0.2
2,600,295	-				+2.0
2,600,567	+		LRK54_RS11725	0.54	+0.4
2,600,567	+		LRK54_RS11725	0.54	+3.1
2,600,568	-		LRK54_RS11725	0.54	-0.3
2,601,610	+		LRK54_RS11730	0.39	-1.8
2,601,610	+		LRK54_RS11730	0.39	+0.2
2,601,610	+		LRK54_RS11730	0.39	-0.6
2,601,610	+		LRK54_RS11730	0.39	-1.3
2,601,610	+		LRK54_RS11730	0.39	-0.0
2,601,610	+		LRK54_RS11730	0.39	-1.2
2,601,610	+		LRK54_RS11730	0.39	-0.7
2,601,610	+		LRK54_RS11730	0.39	+3.0
2,601,610	+		LRK54_RS11730	0.39	+0.9
2,601,610	+		LRK54_RS11730	0.39	+1.1
2,601,610	+		LRK54_RS11730	0.39	-0.1
2,601,610	+		LRK54_RS11730	0.39	-0.1
2,601,610	+		LRK54_RS11730	0.39	-1.0
2,601,610	+		LRK54_RS11730	0.39	+0.6
2,601,610	+		LRK54_RS11730	0.39	-1.3
2,601,610	+		LRK54_RS11730	0.39	-0.8
2,601,610	+		LRK54_RS11730	0.39	+1.8
2,601,610	+		LRK54_RS11730	0.39	-1.1
2,601,610	+		LRK54_RS11730	0.39	-1.0
2,601,610	+		LRK54_RS11730	0.39	+0.3
2,601,610	+		LRK54_RS11730	0.39	+0.5
2,601,611	-		LRK54_RS11730	0.39	+1.0
2,601,611	-		LRK54_RS11730	0.39	-0.3
2,601,611	-		LRK54_RS11730	0.39	-0.3
2,601,611	-		LRK54_RS11730	0.39	-2.4
2,601,611	-		LRK54_RS11730	0.39	-0.2
2,601,611	-		LRK54_RS11730	0.39	+1.0
2,601,611	-		LRK54_RS11730	0.39	-3.6
2,601,611	-		LRK54_RS11730	0.39	+0.4
2,601,611	-		LRK54_RS11730	0.39	-0.5
2,601,611	-		LRK54_RS11730	0.39	+1.0
2,601,611	-		LRK54_RS11730	0.39	-0.3
2,601,611	-		LRK54_RS11730	0.39	-0.9
2,601,611	-		LRK54_RS11730	0.39	-2.3
2,601,611	-		LRK54_RS11730	0.39	-2.7
2,601,611	-		LRK54_RS11730	0.39	-0.2
2,601,611	-		LRK54_RS11730	0.39	-0.8
2,601,611	-		LRK54_RS11730	0.39	-0.4
2,602,375	+		LRK54_RS11730	0.72	-0.1
2,602,375	+		LRK54_RS11730	0.72	+0.7
2,602,375	+		LRK54_RS11730	0.72	-1.0
2,602,375	+		LRK54_RS11730	0.72	+0.8
2,602,375	+		LRK54_RS11730	0.72	+0.8
2,602,375	+		LRK54_RS11730	0.72	-0.6
2,602,375	+		LRK54_RS11730	0.72	+1.3
2,602,375	+		LRK54_RS11730	0.72	+2.0
2,602,375	+		LRK54_RS11730	0.72	-1.3
2,602,375	+		LRK54_RS11730	0.72	+0.6
2,602,375	+		LRK54_RS11730	0.72	+1.3
2,602,375	+		LRK54_RS11730	0.72	+1.4
2,602,375	+		LRK54_RS11730	0.72	+0.9
2,602,375	+		LRK54_RS11730	0.72	+1.0
2,602,375	+		LRK54_RS11730	0.72	+3.0
2,602,375	+		LRK54_RS11730	0.72	+0.5
2,602,375	+		LRK54_RS11730	0.72	-1.8
2,602,376	-		LRK54_RS11730	0.72	-1.2
2,602,376	-		LRK54_RS11730	0.72	-2.9
2,602,376	-		LRK54_RS11730	0.72	+0.0
2,602,376	-		LRK54_RS11730	0.72	-0.9
2,602,376	-		LRK54_RS11730	0.72	-1.7
2,602,376	-		LRK54_RS11730	0.72	+0.7
2,602,376	-		LRK54_RS11730	0.72	+0.4
2,602,376	-		LRK54_RS11730	0.72	+3.0
2,602,376	-		LRK54_RS11730	0.72	-1.1
2,602,376	-		LRK54_RS11730	0.72	+2.0
2,602,376	-		LRK54_RS11730	0.72	-0.9
2,602,376	-		LRK54_RS11730	0.72	+0.7
2,602,376	-		LRK54_RS11730	0.72	-0.3
2,602,376	-		LRK54_RS11730	0.72	-0.8
2,602,376	-		LRK54_RS11730	0.72	-0.2
2,602,376	-		LRK54_RS11730	0.72	-1.9
2,602,376	-		LRK54_RS11730	0.72	-0.5
2,602,376	-		LRK54_RS11730	0.72	-2.9
2,602,376	-		LRK54_RS11730	0.72	+1.0
2,602,492	+		LRK54_RS11730	0.77	-0.2
2,602,492	+		LRK54_RS11730	0.77	+0.2
2,602,492	+		LRK54_RS11730	0.77	-1.8
2,602,492	+		LRK54_RS11730	0.77	-1.5
2,602,493	-		LRK54_RS11730	0.77	-1.3
2,602,493	-		LRK54_RS11730	0.77	+0.5
2,602,493	-		LRK54_RS11730	0.77	-2.4
2,602,493	-		LRK54_RS11730	0.77	-2.4
2,602,493	-		LRK54_RS11730	0.77	+1.0
2,602,493	-		LRK54_RS11730	0.77	+0.6
2,602,493	-		LRK54_RS11730	0.77	-3.3
2,602,493	-		LRK54_RS11730	0.77	-1.0
2,602,567	+		LRK54_RS11730	0.80	-2.3
2,602,567	+		LRK54_RS11730	0.80	-1.9
2,602,567	+		LRK54_RS11730	0.80	-0.3
2,602,567	+		LRK54_RS11730	0.80	+0.3
2,602,567	+		LRK54_RS11730	0.80	-0.3
2,602,567	+		LRK54_RS11730	0.80	-0.5
2,602,568	-		LRK54_RS11730	0.80	-2.1
2,602,568	-		LRK54_RS11730	0.80	-1.8
2,602,568	-		LRK54_RS11730	0.80	-1.3
2,602,568	-		LRK54_RS11730	0.80	+0.3
2,602,568	-		LRK54_RS11730	0.80	+0.3
2,602,568	-		LRK54_RS11730	0.80	-0.8
2,602,568	-		LRK54_RS11730	0.80	+0.4
2,602,568	-		LRK54_RS11730	0.80	-0.2
2,602,568	-		LRK54_RS11730	0.80	-1.4
2,602,756	+		LRK54_RS11730	0.89	+1.8
2,602,756	+		LRK54_RS11730	0.89	-1.3
2,602,756	+		LRK54_RS11730	0.89	+0.4
2,602,756	+		LRK54_RS11730	0.89	-0.9
2,602,757	-		LRK54_RS11730	0.89	-0.3
2,602,912	+				+0.5
2,602,912	+				-0.6
2,602,912	+				-1.8
2,602,912	+				+0.5
2,602,912	+				-0.8
2,602,912	+				-1.3
2,602,912	+				+1.8
2,602,912	+				-0.3
2,602,912	+				-1.0
2,602,912	+				-2.8
2,602,912	+				-1.3
2,602,912	+				-0.7
2,602,912	+				+0.2
2,602,913	-				+1.1
2,602,913	-				+1.0
2,602,913	-				-0.3
2,602,913	-				-0.4
2,602,913	-				+0.6
2,602,913	-				-1.2
2,602,913	-				-2.8
2,602,913	-				+0.3
2,602,913	-				-1.1
2,602,913	-				-0.5
2,602,937	+				-0.3
2,602,937	+				-1.3
2,602,937	+				+0.5
2,603,054	+				-1.1
2,603,054	+				-1.7
2,603,054	+				+1.1
2,603,054	+				+0.2
2,603,054	+				-0.8
2,603,054	+				+0.6
2,603,054	+				+1.7
2,603,054	+				+2.3
2,603,054	+				-1.5
2,603,055	-				-2.5
2,603,055	-				+2.1
2,603,055	-				-0.2
2,603,055	-				+0.6
2,603,055	-				-1.2
2,603,055	-				+1.1
2,603,055	-				-2.3
2,603,055	-				+2.0
2,603,309	+		LRK54_RS11735	0.17	-2.3
2,603,309	+		LRK54_RS11735	0.17	-0.2
2,603,309	+		LRK54_RS11735	0.17	+0.5
2,603,309	+		LRK54_RS11735	0.17	-0.2
2,603,309	+		LRK54_RS11735	0.17	+0.3
2,603,309	+		LRK54_RS11735	0.17	-1.2
2,603,309	+		LRK54_RS11735	0.17	-0.0
2,603,309	+		LRK54_RS11735	0.17	-0.3
2,603,309	+		LRK54_RS11735	0.17	-0.6
2,603,309	+		LRK54_RS11735	0.17	-1.4
2,603,309	+		LRK54_RS11735	0.17	-1.3
2,603,309	+		LRK54_RS11735	0.17	+2.7
2,603,309	+		LRK54_RS11735	0.17	-0.1
2,603,309	+		LRK54_RS11735	0.17	+0.8
2,603,309	+		LRK54_RS11735	0.17	-0.6
2,603,309	+		LRK54_RS11735	0.17	-1.3
2,603,309	+		LRK54_RS11735	0.17	-1.7
2,603,309	+		LRK54_RS11735	0.17	+0.9
2,603,309	+		LRK54_RS11735	0.17	-2.1
2,603,309	+		LRK54_RS11735	0.17	+1.4
2,603,309	+		LRK54_RS11735	0.17	+0.9
2,603,309	+		LRK54_RS11735	0.17	-1.7
2,603,309	+		LRK54_RS11735	0.17	+0.2
2,603,309	+		LRK54_RS11735	0.17	-1.5
2,603,310	-		LRK54_RS11735	0.17	-1.6
2,603,310	-		LRK54_RS11735	0.17	-1.5
2,603,310	-		LRK54_RS11735	0.17	-0.3
2,603,310	-		LRK54_RS11735	0.17	-0.3
2,603,310	-		LRK54_RS11735	0.17	-1.1
2,603,310	-		LRK54_RS11735	0.17	+0.9
2,603,310	-		LRK54_RS11735	0.17	-0.3
2,603,310	-		LRK54_RS11735	0.17	+0.2
2,603,310	-		LRK54_RS11735	0.17	-1.3
2,603,310	-		LRK54_RS11735	0.17	+1.0
2,603,310	-		LRK54_RS11735	0.17	+1.4
2,603,310	-		LRK54_RS11735	0.17	+0.4
2,603,310	-		LRK54_RS11735	0.17	-0.0
2,603,310	-		LRK54_RS11735	0.17	-0.9
2,603,310	-		LRK54_RS11735	0.17	+0.2
2,603,310	-		LRK54_RS11735	0.17	-0.7
2,603,310	-		LRK54_RS11735	0.17	+1.0
2,603,310	-		LRK54_RS11735	0.17	-0.4
2,603,310	-		LRK54_RS11735	0.17	-3.3
2,603,310	-		LRK54_RS11735	0.17	-0.3
2,603,310	-		LRK54_RS11735	0.17	-0.2
2,603,310	-		LRK54_RS11735	0.17	+1.7
2,603,310	-		LRK54_RS11735	0.17	-0.3
2,603,310	-		LRK54_RS11735	0.17	-0.7
2,603,310	-		LRK54_RS11735	0.17	-0.0
2,603,310	-		LRK54_RS11735	0.17	-0.3
2,603,310	-		LRK54_RS11735	0.17	-1.4
2,603,384	+		LRK54_RS11735	0.24	+0.1
2,603,384	+		LRK54_RS11735	0.24	-0.0
2,603,384	+		LRK54_RS11735	0.24	-2.1
2,603,385	-		LRK54_RS11735	0.24	-0.7
2,603,385	-		LRK54_RS11735	0.24	+1.2
2,603,477	+		LRK54_RS11735	0.32	+2.6
2,603,477	+		LRK54_RS11735	0.32	+2.0
2,603,477	+		LRK54_RS11735	0.32	+0.4
2,603,477	+		LRK54_RS11735	0.32	+0.5
2,603,477	+		LRK54_RS11735	0.32	+0.3
2,603,477	+		LRK54_RS11735	0.32	+0.4
2,603,478	-		LRK54_RS11735	0.32	-0.5
2,603,478	-		LRK54_RS11735	0.32	-1.2
2,603,495	+		LRK54_RS11735	0.33	+2.6
2,603,495	+		LRK54_RS11735	0.33	+1.4
2,603,495	+		LRK54_RS11735	0.33	+1.4
2,603,495	+		LRK54_RS11735	0.33	+0.3
2,603,495	+		LRK54_RS11735	0.33	-0.6
2,603,495	+		LRK54_RS11735	0.33	-2.0
2,603,495	+		LRK54_RS11735	0.33	-0.1
2,603,495	+		LRK54_RS11735	0.33	+0.4
2,603,495	+		LRK54_RS11735	0.33	-2.7
2,603,495	+		LRK54_RS11735	0.33	-0.6
2,603,495	+		LRK54_RS11735	0.33	-0.5
2,603,495	+		LRK54_RS11735	0.33	-0.2
2,603,495	+		LRK54_RS11735	0.33	-1.6
2,603,495	+		LRK54_RS11735	0.33	-1.7
2,603,495	+		LRK54_RS11735	0.33	-1.6
2,603,495	+		LRK54_RS11735	0.33	+3.0
2,603,496	-		LRK54_RS11735	0.33	-1.4
2,603,496	-		LRK54_RS11735	0.33	+0.2
2,603,496	-		LRK54_RS11735	0.33	-0.4
2,603,496	-		LRK54_RS11735	0.33	-2.4
2,603,496	-		LRK54_RS11735	0.33	-1.4
2,603,496	-		LRK54_RS11735	0.33	-1.2
2,603,496	-		LRK54_RS11735	0.33	-0.7
2,603,496	-		LRK54_RS11735	0.33	-1.3
2,603,496	-		LRK54_RS11735	0.33	+2.0
2,603,496	-		LRK54_RS11735	0.33	-1.3
2,603,496	-		LRK54_RS11735	0.33	-0.9
2,603,496	-		LRK54_RS11735	0.33	-0.2
2,603,496	-		LRK54_RS11735	0.33	+1.8
2,603,496	-		LRK54_RS11735	0.33	-0.6
2,603,496	-		LRK54_RS11735	0.33	+1.4
2,603,534	+		LRK54_RS11735	0.37	+1.3
2,603,534	+		LRK54_RS11735	0.37	+3.0
2,603,535	-		LRK54_RS11735	0.37	-1.2
2,603,535	-		LRK54_RS11735	0.37	+0.8
2,603,549	+		LRK54_RS11735	0.38	+1.3
2,603,549	+		LRK54_RS11735	0.38	-0.0
2,603,550	-		LRK54_RS11735	0.38	-0.5
2,603,550	-		LRK54_RS11735	0.38	-0.0
2,603,550	-		LRK54_RS11735	0.38	+2.4
2,603,550	-		LRK54_RS11735	0.38	-1.4
2,603,675	+		LRK54_RS11735	0.49	-0.0
2,603,675	+		LRK54_RS11735	0.49	-1.9
2,603,675	+		LRK54_RS11735	0.49	+0.5
2,603,675	+		LRK54_RS11735	0.49	+0.4
2,603,675	+		LRK54_RS11735	0.49	-0.5
2,603,676	-		LRK54_RS11735	0.49	-0.6
2,603,676	-		LRK54_RS11735	0.49	+0.7
2,603,676	-		LRK54_RS11735	0.49	-2.0
2,603,759	+		LRK54_RS11735	0.56	-1.7
2,603,759	+		LRK54_RS11735	0.56	+1.8
2,603,759	+		LRK54_RS11735	0.56	+1.8
2,603,759	+		LRK54_RS11735	0.56	-0.7
2,603,759	+		LRK54_RS11735	0.56	-0.2
2,603,759	+		LRK54_RS11735	0.56	+0.5
2,603,759	+		LRK54_RS11735	0.56	-1.6
2,603,759	+		LRK54_RS11735	0.56	-1.1
2,603,759	+		LRK54_RS11735	0.56	+0.4
2,603,759	+		LRK54_RS11735	0.56	-1.6
2,603,759	+		LRK54_RS11735	0.56	-1.0
2,603,759	+		LRK54_RS11735	0.56	-0.0
2,603,759	+		LRK54_RS11735	0.56	+0.8
2,603,759	+		LRK54_RS11735	0.56	+0.4
2,603,759	+		LRK54_RS11735	0.56	-0.6
2,603,759	+		LRK54_RS11735	0.56	+0.4
2,603,759	+		LRK54_RS11735	0.56	-2.6
2,603,759	+		LRK54_RS11735	0.56	+2.6
2,603,759	+		LRK54_RS11735	0.56	-0.8
2,603,760	-		LRK54_RS11735	0.56	-1.0
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2,603,760	-		LRK54_RS11735	0.56	-0.6
2,603,760	-		LRK54_RS11735	0.56	+0.1
2,603,760	-		LRK54_RS11735	0.56	-3.5
2,603,786	+		LRK54_RS11735	0.58	-0.6
2,603,881	+		LRK54_RS11735	0.66	+0.1
2,603,881	+		LRK54_RS11735	0.66	+0.6
2,603,881	+		LRK54_RS11735	0.66	-0.2
2,603,881	+		LRK54_RS11735	0.66	+1.0
2,603,881	+		LRK54_RS11735	0.66	-0.8
2,603,881	+		LRK54_RS11735	0.66	-2.0
2,603,881	+		LRK54_RS11735	0.66	+0.1
2,603,881	+		LRK54_RS11735	0.66	-0.2
2,603,881	+		LRK54_RS11735	0.66	-1.8
2,603,881	+		LRK54_RS11735	0.66	+3.0
2,603,882	-		LRK54_RS11735	0.66	-0.7
2,603,882	-		LRK54_RS11735	0.66	+2.0
2,603,882	-		LRK54_RS11735	0.66	+0.2
2,603,882	-		LRK54_RS11735	0.66	+0.7
2,603,882	-		LRK54_RS11735	0.66	-1.1
2,603,882	-		LRK54_RS11735	0.66	-0.3
2,603,882	-		LRK54_RS11735	0.66	-0.3
2,603,882	-		LRK54_RS11735	0.66	+0.4
2,603,918	+		LRK54_RS11735	0.69	+1.4
2,603,918	+		LRK54_RS11735	0.69	+0.4
2,603,918	+		LRK54_RS11735	0.69	-1.2
2,603,918	+		LRK54_RS11735	0.69	-2.1
2,603,919	-		LRK54_RS11735	0.70	+0.2
2,603,919	-		LRK54_RS11735	0.70	+1.7
2,603,919	-		LRK54_RS11735	0.70	+0.7
2,603,919	-		LRK54_RS11735	0.70	+1.0
2,603,919	-		LRK54_RS11735	0.70	-0.7
2,603,919	-		LRK54_RS11735	0.70	+1.4