Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01375

Experiment: McCas_formate_complete sulfate 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01370 and MMP_RS01375 are separated by 142 nucleotidesMMP_RS01375 and MMP_RS01380 are separated by 20 nucleotidesMMP_RS01380 and MMP_RS01385 are separated by 35 nucleotides MMP_RS01370: MMP_RS01370 - acetate--CoA ligase family protein, at 253,586 to 255,694 _RS01370 MMP_RS01375: MMP_RS01375 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 255,837 to 257,360 _RS01375 MMP_RS01380: MMP_RS01380 - PHP domain-containing protein, at 257,381 to 258,280 _RS01380 MMP_RS01385: MMP_RS01385 - imidazole glycerol phosphate synthase subunit HisH, at 258,316 to 258,927 _RS01385 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 254.850 kb on + strand, within MMP_RS01370at 254.910 kb on + strand, within MMP_RS01370at 254.910 kb on + strand, within MMP_RS01370at 254.994 kb on + strand, within MMP_RS01370at 255.099 kb on - strand, within MMP_RS01370at 255.099 kb on - strand, within MMP_RS01370at 255.099 kb on - strand, within MMP_RS01370at 255.172 kb on + strand, within MMP_RS01370at 255.449 kb on - strand, within MMP_RS01370at 255.475 kb on - strand, within MMP_RS01370at 255.479 kb on - strand, within MMP_RS01370at 255.547 kb on + strandat 255.694 kb on - strandat 255.694 kb on - strandat 255.694 kb on - strandat 255.694 kb on - strandat 255.694 kb on - strandat 255.695 kb on + strandat 255.695 kb on + strandat 255.695 kb on + strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.697 kb on + strandat 255.698 kb on - strandat 255.715 kb on - strandat 255.715 kb on - strandat 255.716 kb on + strandat 255.733 kb on - strandat 255.733 kb on - strandat 255.739 kb on - strandat 255.740 kb on + strandat 255.749 kb on - strandat 255.756 kb on + strandat 255.759 kb on - strandat 255.759 kb on - strandat 255.776 kb on + strandat 255.779 kb on + strandat 255.779 kb on + strandat 255.780 kb on - strandat 255.780 kb on - strandat 255.785 kb on + strandat 256.172 kb on + strand, within MMP_RS01375at 256.200 kb on + strand, within MMP_RS01375at 256.322 kb on - strand, within MMP_RS01375at 256.358 kb on - strand, within MMP_RS01375at 256.402 kb on - strand, within MMP_RS01375at 256.418 kb on - strand, within MMP_RS01375at 256.419 kb on + strand, within MMP_RS01375at 256.450 kb on - strand, within MMP_RS01375at 256.451 kb on + strand, within MMP_RS01375at 256.455 kb on + strand, within MMP_RS01375at 256.455 kb on + strand, within MMP_RS01375at 256.490 kb on - strand, within MMP_RS01375at 256.492 kb on - strand, within MMP_RS01375at 256.493 kb on + strand, within MMP_RS01375at 256.561 kb on + strand, within MMP_RS01375at 256.796 kb on + strand, within MMP_RS01375at 256.807 kb on + strand, within MMP_RS01375at 256.809 kb on + strand, within MMP_RS01375at 256.809 kb on + strand, within MMP_RS01375at 256.825 kb on - strand, within MMP_RS01375at 256.834 kb on - strand, within MMP_RS01375at 256.874 kb on - strand, within MMP_RS01375at 256.888 kb on - strand, within MMP_RS01375at 256.912 kb on - strand, within MMP_RS01375at 256.921 kb on + strand, within MMP_RS01375at 256.949 kb on - strand, within MMP_RS01375at 256.980 kb on - strand, within MMP_RS01375at 256.983 kb on + strand, within MMP_RS01375at 256.983 kb on + strand, within MMP_RS01375at 257.009 kb on - strand, within MMP_RS01375at 257.010 kb on + strand, within MMP_RS01375at 257.012 kb on + strand, within MMP_RS01375at 257.015 kb on - strand, within MMP_RS01375at 257.040 kb on - strand, within MMP_RS01375at 257.052 kb on - strand, within MMP_RS01375at 257.083 kb on - strand, within MMP_RS01375at 257.090 kb on + strand, within MMP_RS01375at 257.108 kb on + strand, within MMP_RS01375at 257.108 kb on + strand, within MMP_RS01375at 257.110 kb on - strand, within MMP_RS01375at 257.121 kb on + strand, within MMP_RS01375at 257.181 kb on + strand, within MMP_RS01375at 257.182 kb on - strand, within MMP_RS01375at 257.183 kb on + strand, within MMP_RS01375at 257.183 kb on + strand, within MMP_RS01375at 257.209 kb on + strandat 257.251 kb on + strandat 257.354 kb on + strandat 257.354 kb on + strandat 257.358 kb on - strandat 257.395 kb on + strandat 257.415 kb on - strandat 257.444 kb on - strandat 257.619 kb on - strand, within MMP_RS01380at 257.620 kb on + strand, within MMP_RS01380at 257.839 kb on + strand, within MMP_RS01380at 257.842 kb on - strand, within MMP_RS01380at 258.008 kb on - strand, within MMP_RS01380at 258.066 kb on + strand, within MMP_RS01380at 258.121 kb on + strand, within MMP_RS01380at 258.126 kb on + strand, within MMP_RS01380at 258.176 kb on - strand, within MMP_RS01380at 258.220 kb on - strandat 258.223 kb on + strandat 258.309 kb on - strandat 258.314 kb on + strandat 258.314 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sulfate 125 mM
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254,850 + MMP_RS01370 0.60 +3.9
254,910 + MMP_RS01370 0.63 +5.4
254,910 + MMP_RS01370 0.63 +5.4
254,994 + MMP_RS01370 0.67 +4.0
255,099 - MMP_RS01370 0.72 +4.9
255,099 - MMP_RS01370 0.72 +6.0
255,099 - MMP_RS01370 0.72 -1.8
255,172 + MMP_RS01370 0.75 +6.6
255,449 - MMP_RS01370 0.88 -1.5
255,475 - MMP_RS01370 0.90 +6.4
255,479 - MMP_RS01370 0.90 +5.7
255,547 + +5.2
255,694 - +5.4
255,694 - +4.9
255,694 - +5.6
255,694 - +3.4
255,694 - +6.3
255,695 + +5.5
255,695 + +4.8
255,695 + +3.3
255,696 - +5.8
255,696 - +6.0
255,696 - +4.5
255,696 - +6.1
255,696 - +5.7
255,696 - +6.6
255,696 - +3.5
255,696 - +3.0
255,696 - +6.5
255,697 + +4.9
255,697 + +5.2
255,697 + +5.5
255,697 + +3.0
255,697 + +6.1
255,697 + +3.5
255,697 + +4.4
255,697 + -0.7
255,697 + +7.1
255,697 + +6.3
255,698 - +4.5
255,715 - +5.0
255,715 - +3.5
255,716 + +5.5
255,733 - -0.8
255,733 - +4.7
255,739 - +0.9
255,740 + +5.3
255,749 - +0.2
255,756 + +1.1
255,759 - +6.1
255,759 - +4.7
255,776 + -1.7
255,779 + +5.4
255,779 + +4.6
255,780 - +5.3
255,780 - +0.7
255,785 + +4.5
256,172 + MMP_RS01375 0.22 -3.9
256,200 + MMP_RS01375 0.24 -2.2
256,322 - MMP_RS01375 0.32 +3.3
256,358 - MMP_RS01375 0.34 -1.8
256,402 - MMP_RS01375 0.37 -0.4
256,418 - MMP_RS01375 0.38 +1.7
256,419 + MMP_RS01375 0.38 -2.1
256,450 - MMP_RS01375 0.40 -0.9
256,451 + MMP_RS01375 0.40 +0.8
256,455 + MMP_RS01375 0.41 -1.5
256,455 + MMP_RS01375 0.41 +0.3
256,490 - MMP_RS01375 0.43 -4.2
256,492 - MMP_RS01375 0.43 -0.1
256,493 + MMP_RS01375 0.43 -1.0
256,561 + MMP_RS01375 0.48 -2.9
256,796 + MMP_RS01375 0.63 -3.1
256,807 + MMP_RS01375 0.64 -0.4
256,809 + MMP_RS01375 0.64 -0.0
256,809 + MMP_RS01375 0.64 +0.1
256,825 - MMP_RS01375 0.65 -1.0
256,834 - MMP_RS01375 0.65 -2.1
256,874 - MMP_RS01375 0.68 -1.5
256,888 - MMP_RS01375 0.69 -1.8
256,912 - MMP_RS01375 0.71 +0.5
256,921 + MMP_RS01375 0.71 -1.8
256,949 - MMP_RS01375 0.73 -0.9
256,980 - MMP_RS01375 0.75 -2.6
256,983 + MMP_RS01375 0.75 +0.5
256,983 + MMP_RS01375 0.75 +0.6
257,009 - MMP_RS01375 0.77 -1.2
257,010 + MMP_RS01375 0.77 -1.5
257,012 + MMP_RS01375 0.77 +0.8
257,015 - MMP_RS01375 0.77 -2.1
257,040 - MMP_RS01375 0.79 +0.5
257,052 - MMP_RS01375 0.80 +1.3
257,083 - MMP_RS01375 0.82 +0.2
257,090 + MMP_RS01375 0.82 -3.8
257,108 + MMP_RS01375 0.83 -0.2
257,108 + MMP_RS01375 0.83 -2.3
257,110 - MMP_RS01375 0.84 -0.5
257,121 + MMP_RS01375 0.84 +0.3
257,181 + MMP_RS01375 0.88 -0.8
257,182 - MMP_RS01375 0.88 -2.3
257,183 + MMP_RS01375 0.88 -0.8
257,183 + MMP_RS01375 0.88 -0.1
257,209 + -0.0
257,251 + +1.7
257,354 + -2.3
257,354 + +0.9
257,358 - -2.0
257,395 + -2.0
257,415 - -0.6
257,444 - -4.7
257,619 - MMP_RS01380 0.26 -0.8
257,620 + MMP_RS01380 0.27 -3.4
257,839 + MMP_RS01380 0.51 -1.8
257,842 - MMP_RS01380 0.51 +0.6
258,008 - MMP_RS01380 0.70 -2.6
258,066 + MMP_RS01380 0.76 -2.8
258,121 + MMP_RS01380 0.82 -2.9
258,126 + MMP_RS01380 0.83 -2.8
258,176 - MMP_RS01380 0.88 -2.6
258,220 - -2.2
258,223 + -2.0
258,309 - -0.3
258,314 + -1.7
258,314 + -0.9

Or see this region's nucleotide sequence