Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06990

Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06985 and MMP_RS06990 are separated by 15 nucleotidesMMP_RS06990 and MMP_RS06995 are separated by 17 nucleotidesMMP_RS06995 and MMP_RS07000 are separated by 15 nucleotides MMP_RS06985: MMP_RS06985 - tRNA 4-thiouridine(8) synthase ThiI, at 1,333,713 to 1,334,864 _RS06985 MMP_RS06990: MMP_RS06990 - CatB-related O-acetyltransferase, at 1,334,880 to 1,335,560 _RS06990 MMP_RS06995: MMP_RS06995 - TIGR00269 family protein, at 1,335,578 to 1,336,513 _RS06995 MMP_RS07000: MMP_RS07000 - MoaD/ThiS family protein, at 1,336,529 to 1,336,783 _RS07000 Position (kb) 1334 1335 1336Strain fitness (log2 ratio) -3 -2 -1 0 1at 1333.948 kb on + strandat 1334.046 kb on + strandat 1334.330 kb on - strandat 1334.345 kb on + strandat 1334.434 kb on + strandat 1334.434 kb on + strandat 1334.445 kb on + strandat 1334.750 kb on + strandat 1334.844 kb on + strandat 1334.868 kb on + strandat 1334.877 kb on + strandat 1335.025 kb on + strand, within MMP_RS06990at 1335.053 kb on - strand, within MMP_RS06990at 1335.061 kb on + strand, within MMP_RS06990at 1335.095 kb on - strand, within MMP_RS06990at 1335.104 kb on - strand, within MMP_RS06990at 1335.144 kb on + strand, within MMP_RS06990at 1335.271 kb on - strand, within MMP_RS06990at 1335.286 kb on - strand, within MMP_RS06990at 1335.287 kb on + strand, within MMP_RS06990at 1335.360 kb on + strand, within MMP_RS06990at 1335.377 kb on + strand, within MMP_RS06990at 1335.503 kb on - strandat 1335.504 kb on + strandat 1335.510 kb on + strandat 1335.745 kb on + strandat 1336.447 kb on - strandat 1336.448 kb on + strandat 1336.480 kb on + strandat 1336.481 kb on - strandat 1336.517 kb on + strandat 1336.551 kb on - strandat 1336.553 kb on - strandat 1336.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM
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1,333,948 + +0.5
1,334,046 + +1.4
1,334,330 - -0.1
1,334,345 + +1.4
1,334,434 + -0.7
1,334,434 + +1.3
1,334,445 + +0.9
1,334,750 + +0.4
1,334,844 + +0.0
1,334,868 + +0.1
1,334,877 + +0.1
1,335,025 + MMP_RS06990 0.21 -0.1
1,335,053 - MMP_RS06990 0.25 -1.6
1,335,061 + MMP_RS06990 0.27 +0.2
1,335,095 - MMP_RS06990 0.32 -3.5
1,335,104 - MMP_RS06990 0.33 -0.3
1,335,144 + MMP_RS06990 0.39 +0.7
1,335,271 - MMP_RS06990 0.57 -1.8
1,335,286 - MMP_RS06990 0.60 +1.5
1,335,287 + MMP_RS06990 0.60 -0.4
1,335,360 + MMP_RS06990 0.70 +0.7
1,335,377 + MMP_RS06990 0.73 -0.6
1,335,503 - +1.7
1,335,504 + +0.0
1,335,510 + -2.7
1,335,745 + +1.3
1,336,447 - -0.3
1,336,448 + +0.2
1,336,480 + -0.3
1,336,481 - +0.4
1,336,517 + +1.0
1,336,551 - -1.6
1,336,553 - -0.2
1,336,553 - +0.6

Or see this region's nucleotide sequence