Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04260

Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS04255 and MMP_RS04260 are separated by 21 nucleotidesMMP_RS04260 and MMP_RS04265 are separated by 10 nucleotidesMMP_RS04265 and MMP_RS04270 are separated by 13 nucleotides MMP_RS04255: MMP_RS04255 - coenzyme F420 hydrogenase subunit beta, at 811,639 to 812,487 _RS04255 MMP_RS04260: MMP_RS04260 - coenzyme F420 hydrogenase subunit gamma, at 812,509 to 813,237 _RS04260 MMP_RS04265: MMP_RS04265 - coenzyme F420-reducing hydrogenase FrhD protein, at 813,248 to 813,748 _RS04265 MMP_RS04270: MMP_RS04270 - coenzyme F420 hydrogenase subunit alpha, at 813,762 to 814,994 _RS04270 Position (kb) 812 813 814Strain fitness (log2 ratio) -2 -1 0 1at 811.514 kb on + strandat 811.525 kb on + strandat 811.552 kb on - strandat 811.553 kb on + strandat 811.560 kb on - strandat 811.601 kb on - strandat 811.607 kb on - strandat 811.607 kb on - strandat 811.726 kb on - strand, within MMP_RS04255at 811.872 kb on - strand, within MMP_RS04255at 811.925 kb on - strand, within MMP_RS04255at 811.925 kb on - strand, within MMP_RS04255at 811.926 kb on + strand, within MMP_RS04255at 811.935 kb on - strand, within MMP_RS04255at 812.048 kb on + strand, within MMP_RS04255at 812.101 kb on + strand, within MMP_RS04255at 812.124 kb on - strand, within MMP_RS04255at 812.213 kb on - strand, within MMP_RS04255at 812.242 kb on - strand, within MMP_RS04255at 812.374 kb on - strand, within MMP_RS04255at 812.457 kb on - strandat 812.457 kb on - strandat 812.458 kb on + strandat 812.466 kb on - strandat 812.468 kb on - strandat 812.468 kb on - strandat 812.487 kb on - strandat 812.488 kb on + strandat 812.506 kb on - strandat 812.507 kb on + strandat 812.527 kb on - strandat 812.528 kb on + strandat 812.632 kb on - strand, within MMP_RS04260at 812.699 kb on + strand, within MMP_RS04260at 812.913 kb on - strand, within MMP_RS04260at 812.913 kb on - strand, within MMP_RS04260at 813.010 kb on - strand, within MMP_RS04260at 813.133 kb on - strand, within MMP_RS04260at 813.569 kb on - strand, within MMP_RS04265at 813.570 kb on + strand, within MMP_RS04265at 813.696 kb on + strand, within MMP_RS04265at 813.764 kb on + strandat 813.768 kb on - strandat 813.769 kb on + strandat 813.813 kb on - strandat 813.943 kb on - strand, within MMP_RS04270at 813.947 kb on - strand, within MMP_RS04270at 814.144 kb on + strand, within MMP_RS04270at 814.225 kb on - strand, within MMP_RS04270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM
remove
811,514 + +0.6
811,525 + -0.5
811,552 - -1.9
811,553 + -0.3
811,560 - -0.6
811,601 - +0.6
811,607 - +0.6
811,607 - +0.7
811,726 - MMP_RS04255 0.10 -0.6
811,872 - MMP_RS04255 0.27 +0.3
811,925 - MMP_RS04255 0.34 +0.4
811,925 - MMP_RS04255 0.34 -0.6
811,926 + MMP_RS04255 0.34 +0.1
811,935 - MMP_RS04255 0.35 +1.1
812,048 + MMP_RS04255 0.48 +0.8
812,101 + MMP_RS04255 0.54 -1.0
812,124 - MMP_RS04255 0.57 +0.2
812,213 - MMP_RS04255 0.68 -1.6
812,242 - MMP_RS04255 0.71 +1.0
812,374 - MMP_RS04255 0.87 -0.5
812,457 - +0.3
812,457 - -0.4
812,458 + -0.1
812,466 - +0.2
812,468 - +0.7
812,468 - +0.6
812,487 - -1.2
812,488 + +0.5
812,506 - +0.1
812,507 + +0.7
812,527 - +0.9
812,528 + -0.7
812,632 - MMP_RS04260 0.17 -0.3
812,699 + MMP_RS04260 0.26 -1.3
812,913 - MMP_RS04260 0.55 +0.4
812,913 - MMP_RS04260 0.55 -0.5
813,010 - MMP_RS04260 0.69 -0.2
813,133 - MMP_RS04260 0.86 -0.8
813,569 - MMP_RS04265 0.64 +0.6
813,570 + MMP_RS04265 0.64 -0.4
813,696 + MMP_RS04265 0.89 -0.3
813,764 + +0.1
813,768 - -0.6
813,769 + +0.1
813,813 - -0.9
813,943 - MMP_RS04270 0.15 +0.7
813,947 - MMP_RS04270 0.15 -0.2
814,144 + MMP_RS04270 0.31 -1.1
814,225 - MMP_RS04270 0.38 +0.5

Or see this region's nucleotide sequence