Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 626.763 kb on - strand, within MMP_RS03335 at 626.764 kb on + strand, within MMP_RS03335 at 626.796 kb on + strand, within MMP_RS03335 at 627.036 kb on - strand, within MMP_RS03335 at 627.037 kb on + strand, within MMP_RS03335 at 627.055 kb on - strand, within MMP_RS03335 at 627.136 kb on + strand, within MMP_RS03335 at 627.253 kb on - strand, within MMP_RS03335 at 627.354 kb on - strand, within MMP_RS03335 at 627.475 kb on + strand, within MMP_RS03335 at 627.653 kb on + strand at 627.726 kb on - strand at 627.971 kb on - strand, within MMP_RS03340 at 628.394 kb on - strand at 628.441 kb on + strand at 628.506 kb on - strand at 628.544 kb on - strand at 628.551 kb on - strand at 628.559 kb on - strand at 628.559 kb on - strand at 628.561 kb on - strand at 628.579 kb on - strand at 628.745 kb on - strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.795 kb on - strand, within MMP_RS03345 at 628.800 kb on - strand, within MMP_RS03345 at 628.817 kb on - strand, within MMP_RS03345 at 628.999 kb on - strand, within MMP_RS03345 at 629.048 kb on - strand, within MMP_RS03345 at 629.049 kb on + strand, within MMP_RS03345 at 629.053 kb on - strand, within MMP_RS03345 at 629.063 kb on - strand, within MMP_RS03345 at 629.064 kb on + strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.142 kb on + strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.366 kb on + strand, within MMP_RS03345 at 629.368 kb on + strand, within MMP_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM remove 626,763 - MMP_RS03335 0.24 -0.3 626,764 + MMP_RS03335 0.24 -0.5 626,796 + MMP_RS03335 0.27 -0.8 627,036 - MMP_RS03335 0.47 +1.4 627,037 + MMP_RS03335 0.47 -0.5 627,055 - MMP_RS03335 0.48 -0.9 627,136 + MMP_RS03335 0.55 +0.8 627,253 - MMP_RS03335 0.65 -0.6 627,354 - MMP_RS03335 0.73 -2.4 627,475 + MMP_RS03335 0.84 -0.0 627,653 + -0.7 627,726 - +1.3 627,971 - MMP_RS03340 0.41 -2.4 628,394 - +0.4 628,441 + +0.3 628,506 - +0.8 628,544 - +0.6 628,551 - -1.1 628,559 - +0.7 628,559 - +0.5 628,561 - -0.8 628,579 - -1.2 628,745 - MMP_RS03345 0.11 +0.4 628,746 + MMP_RS03345 0.11 +0.8 628,746 + MMP_RS03345 0.11 +0.6 628,795 - MMP_RS03345 0.15 +0.4 628,800 - MMP_RS03345 0.15 -1.4 628,817 - MMP_RS03345 0.17 +0.3 628,999 - MMP_RS03345 0.31 -0.5 629,048 - MMP_RS03345 0.35 +0.3 629,049 + MMP_RS03345 0.35 +0.4 629,053 - MMP_RS03345 0.36 +0.2 629,063 - MMP_RS03345 0.37 -0.8 629,064 + MMP_RS03345 0.37 -0.1 629,065 - MMP_RS03345 0.37 +1.3 629,065 - MMP_RS03345 0.37 -0.4 629,065 - MMP_RS03345 0.37 -0.9 629,141 - MMP_RS03345 0.43 -0.7 629,141 - MMP_RS03345 0.43 +0.5 629,142 + MMP_RS03345 0.43 -0.9 629,143 - MMP_RS03345 0.43 +4.9 629,143 - MMP_RS03345 0.43 +0.0 629,144 + MMP_RS03345 0.43 +0.7 629,144 + MMP_RS03345 0.43 -0.1 629,366 + MMP_RS03345 0.61 -0.0 629,368 + MMP_RS03345 0.61 +0.5
Or see this region's nucleotide sequence