Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02800 and MMP_RS02805 overlap by 14 nucleotides MMP_RS02805 and MMP_RS02810 are separated by 157 nucleotides MMP_RS02810 and MMP_RS02815 are separated by 114 nucleotides MMP_RS02815 and MMP_RS02820 are separated by 6 nucleotides MMP_RS02820 and MMP_RS02825 are separated by 4 nucleotides
MMP_RS02800: MMP_RS02800 - nucleotidyltransferase domain-containing protein, at 535,522 to 536,139
_RS02800
MMP_RS02805: MMP_RS02805 - HEPN domain-containing protein, at 536,126 to 536,635
_RS02805
MMP_RS02810: MMP_RS02810 - hypothetical protein, at 536,793 to 538,262
_RS02810
MMP_RS02815: MMP_RS02815 - hypothetical protein, at 538,377 to 538,952
_RS02815
MMP_RS02820: MMP_RS02820 - hypothetical protein, at 538,959 to 539,189
_RS02820
MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276
_RS02825
Position (kb) 536
537
538
539 Strain fitness (log2 ratio) -2
-1
0
1 at 535.998 kb on + strand, within MMP_RS02800 at 536.013 kb on + strand, within MMP_RS02800 at 536.060 kb on - strand, within MMP_RS02800 at 536.144 kb on - strand at 536.318 kb on + strand, within MMP_RS02805 at 536.714 kb on - strand at 536.742 kb on - strand at 536.761 kb on - strand at 536.761 kb on - strand at 536.761 kb on - strand at 536.773 kb on + strand at 536.848 kb on - strand at 536.850 kb on - strand at 536.851 kb on + strand at 537.199 kb on - strand, within MMP_RS02810 at 537.239 kb on + strand, within MMP_RS02810 at 537.242 kb on + strand, within MMP_RS02810 at 537.243 kb on - strand, within MMP_RS02810 at 537.272 kb on - strand, within MMP_RS02810 at 537.273 kb on + strand, within MMP_RS02810 at 537.275 kb on + strand, within MMP_RS02810 at 537.277 kb on + strand, within MMP_RS02810 at 537.277 kb on + strand, within MMP_RS02810 at 537.314 kb on + strand, within MMP_RS02810 at 537.406 kb on - strand, within MMP_RS02810 at 537.450 kb on - strand, within MMP_RS02810 at 537.450 kb on - strand, within MMP_RS02810 at 537.638 kb on + strand, within MMP_RS02810 at 537.705 kb on + strand, within MMP_RS02810 at 537.976 kb on - strand, within MMP_RS02810 at 538.472 kb on - strand, within MMP_RS02815 at 538.847 kb on + strand, within MMP_RS02815 at 538.976 kb on - strand at 538.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM remove 535,998 + MMP_RS02800 0.77 -0.7 536,013 + MMP_RS02800 0.79 -0.5 536,060 - MMP_RS02800 0.87 +0.3 536,144 - -0.7 536,318 + MMP_RS02805 0.38 +1.0 536,714 - +0.3 536,742 - -0.5 536,761 - +0.8 536,761 - +0.8 536,761 - +0.4 536,773 + -1.0 536,848 - -0.2 536,850 - +0.3 536,851 + +0.1 537,199 - MMP_RS02810 0.28 +0.9 537,239 + MMP_RS02810 0.30 +0.4 537,242 + MMP_RS02810 0.31 -0.3 537,243 - MMP_RS02810 0.31 -0.3 537,272 - MMP_RS02810 0.33 +0.1 537,273 + MMP_RS02810 0.33 -1.0 537,275 + MMP_RS02810 0.33 +0.1 537,277 + MMP_RS02810 0.33 -0.9 537,277 + MMP_RS02810 0.33 +1.0 537,314 + MMP_RS02810 0.35 -1.3 537,406 - MMP_RS02810 0.42 +0.2 537,450 - MMP_RS02810 0.45 -0.6 537,450 - MMP_RS02810 0.45 -1.3 537,638 + MMP_RS02810 0.57 +0.1 537,705 + MMP_RS02810 0.62 +0.2 537,976 - MMP_RS02810 0.80 -1.3 538,472 - MMP_RS02815 0.16 +0.2 538,847 + MMP_RS02815 0.82 -2.0 538,976 - -0.8 538,977 + +0.1
Or see this region's nucleotide sequence