Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01570

Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01565 and MMP_RS01570 overlap by 4 nucleotidesMMP_RS01570 and MMP_RS01575 are separated by 11 nucleotides MMP_RS01565: MMP_RS01565 - AIR synthase related protein, at 291,659 to 293,002 _RS01565 MMP_RS01570: MMP_RS01570 - hypothetical protein, at 292,999 to 293,184 _RS01570 MMP_RS01575: MMP_RS01575 - aldolase, at 293,196 to 294,122 _RS01575 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 292.597 kb on - strandat 292.620 kb on - strandat 293.157 kb on - strand, within MMP_RS01570at 293.187 kb on - strandat 293.198 kb on + strandat 293.217 kb on - strandat 293.219 kb on - strandat 293.220 kb on + strandat 293.413 kb on + strand, within MMP_RS01575at 293.420 kb on - strand, within MMP_RS01575at 293.438 kb on - strand, within MMP_RS01575at 293.487 kb on - strand, within MMP_RS01575at 293.682 kb on - strand, within MMP_RS01575at 293.682 kb on - strand, within MMP_RS01575at 293.838 kb on + strand, within MMP_RS01575at 294.029 kb on - strand, within MMP_RS01575at 294.137 kb on - strandat 294.145 kb on + strandat 294.152 kb on - strandat 294.153 kb on + strandat 294.164 kb on - strandat 294.164 kb on - strandat 294.172 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM
remove
292,597 - +0.7
292,620 - +4.9
293,157 - MMP_RS01570 0.85 -0.9
293,187 - -1.3
293,198 + +1.3
293,217 - -2.5
293,219 - -0.4
293,220 + +0.1
293,413 + MMP_RS01575 0.23 -2.0
293,420 - MMP_RS01575 0.24 -0.7
293,438 - MMP_RS01575 0.26 +0.1
293,487 - MMP_RS01575 0.31 +0.6
293,682 - MMP_RS01575 0.52 -2.1
293,682 - MMP_RS01575 0.52 -1.7
293,838 + MMP_RS01575 0.69 +0.6
294,029 - MMP_RS01575 0.90 +0.1
294,137 - +1.8
294,145 + -0.3
294,152 - -1.6
294,153 + -0.0
294,164 - -0.6
294,164 - -1.1
294,172 - +0.4

Or see this region's nucleotide sequence