Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01485 and MMP_RS01490 are separated by 24 nucleotides MMP_RS01490 and MMP_RS01495 are separated by 129 nucleotides
MMP_RS01485: MMP_RS01485 - right-handed parallel beta-helix repeat-containing protein, at 274,500 to 277,178
_RS01485
MMP_RS01490: MMP_RS01490 - tetratricopeptide repeat protein, at 277,203 to 278,237
_RS01490
MMP_RS01495: MMP_RS01495 - TraB/GumN family protein, at 278,367 to 279,509
_RS01495
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14 at 276.295 kb on - strand, within MMP_RS01485 at 276.432 kb on - strand, within MMP_RS01485 at 276.474 kb on + strand, within MMP_RS01485 at 276.541 kb on - strand, within MMP_RS01485 at 276.561 kb on - strand, within MMP_RS01485 at 276.711 kb on + strand, within MMP_RS01485 at 276.744 kb on + strand, within MMP_RS01485 at 276.779 kb on - strand, within MMP_RS01485 at 276.805 kb on - strand, within MMP_RS01485 at 277.224 kb on + strand at 277.319 kb on + strand, within MMP_RS01490 at 277.540 kb on - strand, within MMP_RS01490 at 277.625 kb on + strand, within MMP_RS01490 at 277.685 kb on - strand, within MMP_RS01490 at 277.685 kb on - strand, within MMP_RS01490 at 277.800 kb on + strand, within MMP_RS01490 at 277.932 kb on - strand, within MMP_RS01490 at 277.950 kb on + strand, within MMP_RS01490 at 278.281 kb on + strand at 278.737 kb on + strand, within MMP_RS01495 at 278.766 kb on - strand, within MMP_RS01495 at 278.822 kb on - strand, within MMP_RS01495 at 278.895 kb on - strand, within MMP_RS01495 at 278.895 kb on - strand, within MMP_RS01495 at 278.896 kb on + strand, within MMP_RS01495 at 278.939 kb on - strand, within MMP_RS01495 at 278.939 kb on - strand, within MMP_RS01495 at 278.939 kb on - strand, within MMP_RS01495 at 278.941 kb on - strand, within MMP_RS01495 at 278.942 kb on + strand, within MMP_RS01495 at 278.942 kb on + strand, within MMP_RS01495 at 278.945 kb on - strand, within MMP_RS01495 at 278.946 kb on + strand, within MMP_RS01495
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM remove 276,295 - MMP_RS01485 0.67 -0.3 276,432 - MMP_RS01485 0.72 +14.4 276,474 + MMP_RS01485 0.74 +12.6 276,541 - MMP_RS01485 0.76 -0.1 276,561 - MMP_RS01485 0.77 +0.5 276,711 + MMP_RS01485 0.83 -2.3 276,744 + MMP_RS01485 0.84 +1.2 276,779 - MMP_RS01485 0.85 +0.1 276,805 - MMP_RS01485 0.86 +0.4 277,224 + -0.6 277,319 + MMP_RS01490 0.11 -0.2 277,540 - MMP_RS01490 0.33 +0.2 277,625 + MMP_RS01490 0.41 -3.3 277,685 - MMP_RS01490 0.47 -0.2 277,685 - MMP_RS01490 0.47 +0.3 277,800 + MMP_RS01490 0.58 +0.4 277,932 - MMP_RS01490 0.70 -0.8 277,950 + MMP_RS01490 0.72 -0.2 278,281 + +0.7 278,737 + MMP_RS01495 0.32 -0.9 278,766 - MMP_RS01495 0.35 -0.5 278,822 - MMP_RS01495 0.40 +0.0 278,895 - MMP_RS01495 0.46 +1.7 278,895 - MMP_RS01495 0.46 -1.6 278,896 + MMP_RS01495 0.46 +0.5 278,939 - MMP_RS01495 0.50 +1.0 278,939 - MMP_RS01495 0.50 -0.5 278,939 - MMP_RS01495 0.50 +0.2 278,941 - MMP_RS01495 0.50 -0.9 278,942 + MMP_RS01495 0.50 -1.7 278,942 + MMP_RS01495 0.50 -0.1 278,945 - MMP_RS01495 0.51 +0.4 278,946 + MMP_RS01495 0.51 +0.6
Or see this region's nucleotide sequence