Experiment: McCas_formate_complete metavanadate 4.54545454545455 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00640 and MMP_RS00645 are separated by 32 nucleotides MMP_RS00645 and MMP_RS00650 overlap by 10 nucleotides MMP_RS00650 and MMP_RS00655 are separated by 3 nucleotides
MMP_RS00640: MMP_RS00640 - ABC transporter substrate-binding protein, at 116,352 to 117,383
_RS00640
MMP_RS00645: MMP_RS00645 - iron ABC transporter permease, at 117,416 to 119,032
_RS00645
MMP_RS00650: MMP_RS00650 - ABC transporter ATP-binding protein, at 119,023 to 119,991
_RS00650
MMP_RS00655: MMP_RS00655 - hypothetical protein, at 119,995 to 120,534
_RS00655
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 116.435 kb on - strand at 116.671 kb on + strand, within MMP_RS00640 at 116.761 kb on - strand, within MMP_RS00640 at 116.821 kb on - strand, within MMP_RS00640 at 116.835 kb on - strand, within MMP_RS00640 at 116.849 kb on + strand, within MMP_RS00640 at 116.883 kb on - strand, within MMP_RS00640 at 116.883 kb on - strand, within MMP_RS00640 at 116.889 kb on + strand, within MMP_RS00640 at 116.893 kb on - strand, within MMP_RS00640 at 116.894 kb on + strand, within MMP_RS00640 at 116.894 kb on + strand, within MMP_RS00640 at 117.032 kb on + strand, within MMP_RS00640 at 117.323 kb on - strand at 117.353 kb on - strand at 117.353 kb on - strand at 117.375 kb on + strand at 117.394 kb on - strand at 117.767 kb on - strand, within MMP_RS00645 at 117.832 kb on + strand, within MMP_RS00645 at 117.832 kb on + strand, within MMP_RS00645 at 117.833 kb on - strand, within MMP_RS00645 at 118.261 kb on - strand, within MMP_RS00645 at 118.261 kb on - strand, within MMP_RS00645 at 118.262 kb on + strand, within MMP_RS00645 at 118.442 kb on + strand, within MMP_RS00645 at 118.442 kb on + strand, within MMP_RS00645 at 118.496 kb on - strand, within MMP_RS00645 at 118.499 kb on + strand, within MMP_RS00645 at 118.500 kb on - strand, within MMP_RS00645 at 118.501 kb on + strand, within MMP_RS00645 at 118.503 kb on - strand, within MMP_RS00645 at 118.504 kb on + strand, within MMP_RS00645 at 118.606 kb on - strand, within MMP_RS00645 at 118.809 kb on - strand, within MMP_RS00645 at 118.952 kb on - strand at 119.214 kb on - strand, within MMP_RS00650 at 119.462 kb on - strand, within MMP_RS00650 at 119.463 kb on + strand, within MMP_RS00650 at 119.681 kb on + strand, within MMP_RS00650 at 119.748 kb on + strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.876 kb on + strand, within MMP_RS00650 at 119.888 kb on + strand, within MMP_RS00650 at 119.976 kb on - strand at 119.978 kb on - strand at 119.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete metavanadate 4.54545454545455 mM remove 116,435 - -0.1 116,671 + MMP_RS00640 0.31 +0.0 116,761 - MMP_RS00640 0.40 -1.6 116,821 - MMP_RS00640 0.45 -1.2 116,835 - MMP_RS00640 0.47 -1.0 116,849 + MMP_RS00640 0.48 -0.9 116,883 - MMP_RS00640 0.51 +0.3 116,883 - MMP_RS00640 0.51 +1.2 116,889 + MMP_RS00640 0.52 +0.9 116,893 - MMP_RS00640 0.52 -1.2 116,894 + MMP_RS00640 0.53 +0.3 116,894 + MMP_RS00640 0.53 -0.2 117,032 + MMP_RS00640 0.66 +1.4 117,323 - -0.9 117,353 - -0.0 117,353 - +0.1 117,375 + -0.3 117,394 - -1.0 117,767 - MMP_RS00645 0.22 -0.3 117,832 + MMP_RS00645 0.26 -1.6 117,832 + MMP_RS00645 0.26 -0.1 117,833 - MMP_RS00645 0.26 -2.3 118,261 - MMP_RS00645 0.52 +0.3 118,261 - MMP_RS00645 0.52 -0.8 118,262 + MMP_RS00645 0.52 +0.2 118,442 + MMP_RS00645 0.63 +0.3 118,442 + MMP_RS00645 0.63 -0.6 118,496 - MMP_RS00645 0.67 +1.2 118,499 + MMP_RS00645 0.67 -1.0 118,500 - MMP_RS00645 0.67 -0.2 118,501 + MMP_RS00645 0.67 -0.1 118,503 - MMP_RS00645 0.67 -0.4 118,504 + MMP_RS00645 0.67 -1.0 118,606 - MMP_RS00645 0.74 -1.4 118,809 - MMP_RS00645 0.86 +0.1 118,952 - +0.0 119,214 - MMP_RS00650 0.20 -0.3 119,462 - MMP_RS00650 0.45 -0.8 119,463 + MMP_RS00650 0.45 -0.1 119,681 + MMP_RS00650 0.68 -0.8 119,748 + MMP_RS00650 0.75 -0.1 119,875 - MMP_RS00650 0.88 +0.5 119,875 - MMP_RS00650 0.88 -0.1 119,876 + MMP_RS00650 0.88 -1.3 119,888 + MMP_RS00650 0.89 -0.3 119,976 - +9.6 119,978 - -1.8 119,993 - +0.4
Or see this region's nucleotide sequence