Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04965

Experiment: McCas_formate_complete rubidium chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04955 and MMP_RS04960 are separated by 1 nucleotidesMMP_RS04960 and MMP_RS04965 are separated by 19 nucleotidesMMP_RS04965 and MMP_RS04970 are separated by 16 nucleotides MMP_RS04955: MMP_RS04955 - DNA topoisomerase I, at 943,765 to 946,236 _RS04955 MMP_RS04960: MMP_RS04960 - cytochrome c biogenesis CcdA family protein, at 946,238 to 946,891 _RS04960 MMP_RS04965: MMP_RS04965 - thioredoxin family protein, at 946,911 to 947,258 _RS04965 MMP_RS04970: MMP_RS04970 - F420-dependent thioredoxin reductase, at 947,275 to 948,177 _RS04970 Position (kb) 946 947 948Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 945.976 kb on + strand, within MMP_RS04955at 946.035 kb on - strandat 946.080 kb on - strandat 946.120 kb on + strandat 946.150 kb on + strandat 946.155 kb on - strandat 946.234 kb on - strandat 946.246 kb on - strandat 946.247 kb on + strandat 946.247 kb on + strandat 946.250 kb on - strandat 946.250 kb on - strandat 946.251 kb on + strandat 946.253 kb on - strandat 946.277 kb on - strandat 946.277 kb on - strandat 946.279 kb on - strandat 946.279 kb on - strandat 946.280 kb on + strandat 946.280 kb on + strandat 946.291 kb on - strandat 946.292 kb on + strandat 946.292 kb on + strandat 946.292 kb on + strandat 946.292 kb on + strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.298 kb on - strandat 946.299 kb on + strandat 946.300 kb on - strandat 946.301 kb on + strandat 946.301 kb on + strandat 946.316 kb on - strand, within MMP_RS04960at 946.328 kb on - strand, within MMP_RS04960at 946.328 kb on - strand, within MMP_RS04960at 946.479 kb on + strand, within MMP_RS04960at 946.480 kb on - strand, within MMP_RS04960at 946.480 kb on - strand, within MMP_RS04960at 946.480 kb on - strand, within MMP_RS04960at 946.481 kb on + strand, within MMP_RS04960at 946.539 kb on + strand, within MMP_RS04960at 946.600 kb on - strand, within MMP_RS04960at 946.601 kb on + strand, within MMP_RS04960at 946.619 kb on + strand, within MMP_RS04960at 946.619 kb on + strand, within MMP_RS04960at 946.622 kb on - strand, within MMP_RS04960at 946.623 kb on + strand, within MMP_RS04960at 946.764 kb on + strand, within MMP_RS04960at 946.766 kb on - strand, within MMP_RS04960at 946.917 kb on + strandat 947.070 kb on - strand, within MMP_RS04965at 947.071 kb on + strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.073 kb on + strand, within MMP_RS04965at 947.073 kb on + strand, within MMP_RS04965at 947.102 kb on - strand, within MMP_RS04965at 947.201 kb on - strand, within MMP_RS04965at 947.221 kb on + strand, within MMP_RS04965at 947.226 kb on - strandat 947.229 kb on + strandat 947.229 kb on + strandat 947.232 kb on - strandat 947.233 kb on + strandat 947.233 kb on + strandat 947.273 kb on - strandat 947.293 kb on - strandat 947.392 kb on + strand, within MMP_RS04970at 947.434 kb on + strand, within MMP_RS04970at 947.488 kb on - strand, within MMP_RS04970at 947.635 kb on - strand, within MMP_RS04970at 947.653 kb on - strand, within MMP_RS04970at 947.674 kb on - strand, within MMP_RS04970at 947.675 kb on + strand, within MMP_RS04970at 947.675 kb on + strand, within MMP_RS04970at 947.694 kb on - strand, within MMP_RS04970at 947.695 kb on + strand, within MMP_RS04970at 947.706 kb on - strand, within MMP_RS04970at 947.706 kb on - strand, within MMP_RS04970at 947.708 kb on - strand, within MMP_RS04970at 947.708 kb on - strand, within MMP_RS04970at 947.708 kb on - strand, within MMP_RS04970at 947.786 kb on + strand, within MMP_RS04970at 947.828 kb on + strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.863 kb on - strand, within MMP_RS04970at 947.863 kb on - strand, within MMP_RS04970at 947.864 kb on + strand, within MMP_RS04970at 947.866 kb on - strand, within MMP_RS04970at 947.883 kb on + strand, within MMP_RS04970at 947.925 kb on - strand, within MMP_RS04970at 947.930 kb on + strand, within MMP_RS04970at 948.172 kb on - strandat 948.202 kb on - strandat 948.203 kb on + strandat 948.220 kb on + strandat 948.221 kb on - strandat 948.223 kb on - strandat 948.223 kb on - strandat 948.223 kb on - strandat 948.228 kb on - strandat 948.228 kb on - strandat 948.229 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete rubidium chloride 62.5 mM
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945,976 + MMP_RS04955 0.89 +1.8
946,035 - +0.1
946,080 - +2.4
946,120 + -0.5
946,150 + -0.5
946,155 - +1.5
946,234 - +0.5
946,246 - -0.0
946,247 + +0.4
946,247 + -0.8
946,250 - +0.2
946,250 - -0.8
946,251 + +0.3
946,253 - +0.0
946,277 - +0.3
946,277 - -0.5
946,279 - +0.6
946,279 - +0.1
946,280 + +0.3
946,280 + +2.8
946,291 - +0.9
946,292 + +0.1
946,292 + -0.0
946,292 + -2.7
946,292 + +0.4
946,293 - -0.2
946,293 - +0.2
946,293 - +0.2
946,293 - +0.4
946,293 - +4.4
946,293 - -0.2
946,293 - -0.5
946,294 + +0.3
946,294 + -0.2
946,294 + +1.4
946,294 + -0.3
946,294 + -0.4
946,298 - +0.6
946,299 + -0.5
946,300 - +0.9
946,301 + +1.0
946,301 + +0.0
946,316 - MMP_RS04960 0.12 +0.3
946,328 - MMP_RS04960 0.14 +0.2
946,328 - MMP_RS04960 0.14 -1.2
946,479 + MMP_RS04960 0.37 +0.1
946,480 - MMP_RS04960 0.37 +0.2
946,480 - MMP_RS04960 0.37 +0.5
946,480 - MMP_RS04960 0.37 +0.8
946,481 + MMP_RS04960 0.37 +0.3
946,539 + MMP_RS04960 0.46 +0.7
946,600 - MMP_RS04960 0.55 -0.3
946,601 + MMP_RS04960 0.56 -0.5
946,619 + MMP_RS04960 0.58 +0.2
946,619 + MMP_RS04960 0.58 +1.8
946,622 - MMP_RS04960 0.59 -0.1
946,623 + MMP_RS04960 0.59 +2.2
946,764 + MMP_RS04960 0.80 -0.3
946,766 - MMP_RS04960 0.81 -0.4
946,917 + +0.5
947,070 - MMP_RS04965 0.46 -0.0
947,071 + MMP_RS04965 0.46 +0.2
947,072 - MMP_RS04965 0.46 +0.6
947,072 - MMP_RS04965 0.46 -0.1
947,072 - MMP_RS04965 0.46 -0.0
947,072 - MMP_RS04965 0.46 -0.2
947,072 - MMP_RS04965 0.46 -0.2
947,072 - MMP_RS04965 0.46 -1.3
947,072 - MMP_RS04965 0.46 -0.3
947,073 + MMP_RS04965 0.47 -0.3
947,073 + MMP_RS04965 0.47 -1.4
947,102 - MMP_RS04965 0.55 -0.3
947,201 - MMP_RS04965 0.83 +0.1
947,221 + MMP_RS04965 0.89 -0.0
947,226 - +1.2
947,229 + +0.2
947,229 + +0.1
947,232 - -0.2
947,233 + +1.7
947,233 + -0.1
947,273 - -0.0
947,293 - +0.2
947,392 + MMP_RS04970 0.13 -0.9
947,434 + MMP_RS04970 0.18 +0.6
947,488 - MMP_RS04970 0.24 -0.7
947,635 - MMP_RS04970 0.40 -0.1
947,653 - MMP_RS04970 0.42 +0.5
947,674 - MMP_RS04970 0.44 +0.2
947,675 + MMP_RS04970 0.44 +0.5
947,675 + MMP_RS04970 0.44 +0.1
947,694 - MMP_RS04970 0.46 -0.4
947,695 + MMP_RS04970 0.47 +0.4
947,706 - MMP_RS04970 0.48 -1.9
947,706 - MMP_RS04970 0.48 +0.1
947,708 - MMP_RS04970 0.48 -0.4
947,708 - MMP_RS04970 0.48 +0.5
947,708 - MMP_RS04970 0.48 -0.0
947,786 + MMP_RS04970 0.57 +0.1
947,828 + MMP_RS04970 0.61 -0.9
947,847 - MMP_RS04970 0.63 +0.8
947,847 - MMP_RS04970 0.63 +0.0
947,847 - MMP_RS04970 0.63 -0.0
947,847 - MMP_RS04970 0.63 -0.1
947,863 - MMP_RS04970 0.65 +0.8
947,863 - MMP_RS04970 0.65 +0.3
947,864 + MMP_RS04970 0.65 -0.5
947,866 - MMP_RS04970 0.65 +0.0
947,883 + MMP_RS04970 0.67 +1.0
947,925 - MMP_RS04970 0.72 +0.4
947,930 + MMP_RS04970 0.73 +0.6
948,172 - +2.7
948,202 - +0.5
948,203 + +1.2
948,220 + +0.2
948,221 - -1.0
948,223 - +0.7
948,223 - +0.1
948,223 - +0.9
948,228 - -0.2
948,228 - -0.1
948,229 + +0.1

Or see this region's nucleotide sequence