Experiment: McCas_formate_complete rubidium chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04535 and MMP_RS04540 are separated by 89 nucleotides MMP_RS04540 and MMP_RS04545 are separated by 13 nucleotides
MMP_RS04535: MMP_RS04535 - hydroxymethylbilane synthase, at 863,940 to 864,854
_RS04535
MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647
_RS04540
MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458
_RS04545
Position (kb)
864
865
866
867 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 863.969 kb on - strand at 863.970 kb on + strand at 863.994 kb on - strand at 863.995 kb on + strand at 864.010 kb on - strand at 864.011 kb on + strand at 864.047 kb on - strand at 864.048 kb on + strand at 864.075 kb on + strand at 864.245 kb on + strand at 864.290 kb on + strand at 864.424 kb on - strand at 864.425 kb on + strand at 864.700 kb on - strand at 864.729 kb on + strand at 864.763 kb on - strand at 864.766 kb on - strand at 864.767 kb on + strand at 864.771 kb on + strand at 864.771 kb on + strand at 864.771 kb on + strand at 864.828 kb on + strand at 864.845 kb on - strand at 864.849 kb on - strand at 864.849 kb on - strand at 864.897 kb on - strand at 864.901 kb on - strand at 864.974 kb on - strand at 864.974 kb on - strand at 865.115 kb on - strand, within MMP_RS04540 at 865.115 kb on - strand, within MMP_RS04540 at 865.115 kb on - strand, within MMP_RS04540 at 865.348 kb on + strand, within MMP_RS04540 at 865.380 kb on - strand, within MMP_RS04540 at 865.380 kb on - strand, within MMP_RS04540 at 865.468 kb on - strand, within MMP_RS04540 at 865.469 kb on + strand, within MMP_RS04540 at 865.535 kb on - strand, within MMP_RS04540 at 865.536 kb on + strand, within MMP_RS04540 at 865.536 kb on + strand, within MMP_RS04540 at 865.651 kb on - strand, within MMP_RS04540 at 865.657 kb on + strand, within MMP_RS04540 at 865.719 kb on - strand, within MMP_RS04540 at 865.720 kb on + strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.814 kb on - strand, within MMP_RS04540 at 865.815 kb on + strand, within MMP_RS04540 at 865.833 kb on - strand, within MMP_RS04540 at 865.834 kb on + strand, within MMP_RS04540 at 865.992 kb on - strand, within MMP_RS04540 at 866.014 kb on + strand, within MMP_RS04540 at 866.021 kb on + strand, within MMP_RS04540 at 866.061 kb on - strand, within MMP_RS04540 at 866.061 kb on - strand, within MMP_RS04540 at 866.065 kb on + strand, within MMP_RS04540 at 866.155 kb on - strand, within MMP_RS04540 at 866.378 kb on - strand, within MMP_RS04540 at 866.384 kb on + strand, within MMP_RS04540 at 866.417 kb on - strand, within MMP_RS04540 at 866.417 kb on - strand, within MMP_RS04540 at 866.438 kb on - strand, within MMP_RS04540 at 866.482 kb on + strand at 866.482 kb on + strand at 866.483 kb on - strand at 866.483 kb on - strand at 866.484 kb on + strand at 866.501 kb on - strand at 866.501 kb on - strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.502 kb on + strand at 866.512 kb on + strand at 866.519 kb on - strand at 866.520 kb on + strand at 866.559 kb on - strand at 866.559 kb on - strand at 866.609 kb on + strand at 866.609 kb on + strand at 866.609 kb on + strand at 866.653 kb on - strand at 866.658 kb on + strand at 866.662 kb on - strand at 866.738 kb on - strand at 866.742 kb on - strand, within MMP_RS04545 at 866.757 kb on - strand, within MMP_RS04545 at 866.758 kb on + strand, within MMP_RS04545 at 866.787 kb on + strand, within MMP_RS04545 at 866.791 kb on + strand, within MMP_RS04545 at 866.796 kb on - strand, within MMP_RS04545 at 866.884 kb on + strand, within MMP_RS04545 at 866.888 kb on - strand, within MMP_RS04545 at 866.889 kb on + strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.899 kb on - strand, within MMP_RS04545 at 866.901 kb on - strand, within MMP_RS04545 at 866.901 kb on - strand, within MMP_RS04545 at 866.902 kb on + strand, within MMP_RS04545 at 866.914 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.925 kb on + strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.999 kb on - strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.036 kb on - strand, within MMP_RS04545 at 867.042 kb on + strand, within MMP_RS04545 at 867.061 kb on - strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.124 kb on + strand, within MMP_RS04545 at 867.137 kb on - strand, within MMP_RS04545 at 867.140 kb on - strand, within MMP_RS04545 at 867.141 kb on + strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.156 kb on + strand, within MMP_RS04545 at 867.180 kb on - strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.183 kb on + strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.261 kb on + strand, within MMP_RS04545 at 867.269 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.364 kb on - strand, within MMP_RS04545 at 867.365 kb on + strand, within MMP_RS04545 at 867.555 kb on + strand at 867.555 kb on + strand at 867.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete rubidium chloride 62.5 mM remove 863,969 - +0.5 863,970 + +0.8 863,994 - +0.0 863,995 + -1.7 864,010 - +1.7 864,011 + -0.3 864,047 - +0.2 864,048 + +1.1 864,075 + +1.1 864,245 + +1.2 864,290 + +0.7 864,424 - -0.7 864,425 + +0.3 864,700 - +0.6 864,729 + -0.5 864,763 - +0.7 864,766 - +1.0 864,767 + +1.6 864,771 + +0.9 864,771 + +1.6 864,771 + +0.9 864,828 + -0.1 864,845 - -0.4 864,849 - +0.3 864,849 - -0.1 864,897 - +0.2 864,901 - +0.2 864,974 - -0.5 864,974 - -0.3 865,115 - MMP_RS04540 0.10 -0.0 865,115 - MMP_RS04540 0.10 +0.0 865,115 - MMP_RS04540 0.10 +0.7 865,348 + MMP_RS04540 0.24 +1.0 865,380 - MMP_RS04540 0.26 +0.8 865,380 - MMP_RS04540 0.26 +0.2 865,468 - MMP_RS04540 0.31 -0.4 865,469 + MMP_RS04540 0.31 +0.2 865,535 - MMP_RS04540 0.35 +0.3 865,536 + MMP_RS04540 0.35 +0.0 865,536 + MMP_RS04540 0.35 +0.3 865,651 - MMP_RS04540 0.41 -0.1 865,657 + MMP_RS04540 0.42 +0.2 865,719 - MMP_RS04540 0.45 -0.7 865,720 + MMP_RS04540 0.46 +0.5 865,726 - MMP_RS04540 0.46 -0.3 865,726 - MMP_RS04540 0.46 +0.3 865,814 - MMP_RS04540 0.51 -0.7 865,815 + MMP_RS04540 0.51 -0.8 865,833 - MMP_RS04540 0.52 -1.4 865,834 + MMP_RS04540 0.52 -0.4 865,992 - MMP_RS04540 0.62 +0.4 866,014 + MMP_RS04540 0.63 -0.1 866,021 + MMP_RS04540 0.63 -0.4 866,061 - MMP_RS04540 0.66 -0.5 866,061 - MMP_RS04540 0.66 -0.5 866,065 + MMP_RS04540 0.66 -0.1 866,155 - MMP_RS04540 0.71 -0.3 866,378 - MMP_RS04540 0.84 -0.1 866,384 + MMP_RS04540 0.85 -0.9 866,417 - MMP_RS04540 0.86 +0.6 866,417 - MMP_RS04540 0.86 -0.0 866,438 - MMP_RS04540 0.88 -1.2 866,482 + -0.1 866,482 + -0.3 866,483 - -1.1 866,483 - +1.2 866,484 + +2.7 866,501 - +0.1 866,501 - +0.7 866,502 + -0.4 866,502 + +0.4 866,502 + -0.3 866,502 + +0.6 866,502 + -0.3 866,502 + -0.1 866,512 + +0.5 866,519 - +0.6 866,520 + +0.5 866,559 - -0.2 866,559 - -0.4 866,609 + +0.3 866,609 + +0.2 866,609 + -0.1 866,653 - -1.0 866,658 + -0.3 866,662 - +0.5 866,738 - -0.3 866,742 - MMP_RS04545 0.10 -0.3 866,757 - MMP_RS04545 0.12 -0.2 866,758 + MMP_RS04545 0.12 -0.1 866,787 + MMP_RS04545 0.16 -0.1 866,791 + MMP_RS04545 0.16 +0.3 866,796 - MMP_RS04545 0.17 -0.6 866,884 + MMP_RS04545 0.28 -0.3 866,888 - MMP_RS04545 0.28 +1.5 866,889 + MMP_RS04545 0.29 +0.1 866,899 - MMP_RS04545 0.30 -0.9 866,899 - MMP_RS04545 0.30 +0.4 866,899 - MMP_RS04545 0.30 -0.4 866,899 - MMP_RS04545 0.30 +0.7 866,901 - MMP_RS04545 0.30 -0.8 866,901 - MMP_RS04545 0.30 +0.5 866,902 + MMP_RS04545 0.30 -0.1 866,914 - MMP_RS04545 0.32 +4.3 866,916 - MMP_RS04545 0.32 +0.5 866,916 - MMP_RS04545 0.32 +0.4 866,916 - MMP_RS04545 0.32 +0.0 866,916 - MMP_RS04545 0.32 +0.9 866,917 + MMP_RS04545 0.32 -0.0 866,917 + MMP_RS04545 0.32 +0.2 866,917 + MMP_RS04545 0.32 -0.3 866,917 + MMP_RS04545 0.32 -0.1 866,919 - MMP_RS04545 0.32 -0.6 866,919 - MMP_RS04545 0.32 -0.3 866,920 + MMP_RS04545 0.32 +0.5 866,920 + MMP_RS04545 0.32 -1.2 866,920 + MMP_RS04545 0.32 -0.2 866,920 + MMP_RS04545 0.32 -0.1 866,920 + MMP_RS04545 0.32 +0.0 866,920 + MMP_RS04545 0.32 -0.1 866,920 + MMP_RS04545 0.32 -1.4 866,925 + MMP_RS04545 0.33 -0.6 866,926 - MMP_RS04545 0.33 +0.3 866,926 - MMP_RS04545 0.33 +0.8 866,926 - MMP_RS04545 0.33 +0.7 866,938 - MMP_RS04545 0.35 +0.1 866,938 - MMP_RS04545 0.35 -0.1 866,938 - MMP_RS04545 0.35 +0.8 866,939 + MMP_RS04545 0.35 +0.6 866,939 + MMP_RS04545 0.35 -1.3 866,997 + MMP_RS04545 0.42 +0.1 866,997 + MMP_RS04545 0.42 +2.7 866,999 - MMP_RS04545 0.42 +0.1 867,000 + MMP_RS04545 0.42 -0.0 867,000 + MMP_RS04545 0.42 -0.2 867,000 + MMP_RS04545 0.42 +0.0 867,001 - MMP_RS04545 0.43 -0.0 867,001 - MMP_RS04545 0.43 +0.0 867,001 - MMP_RS04545 0.43 -0.1 867,001 - MMP_RS04545 0.43 -0.7 867,001 - MMP_RS04545 0.43 -1.1 867,002 + MMP_RS04545 0.43 +1.0 867,002 + MMP_RS04545 0.43 -0.3 867,002 + MMP_RS04545 0.43 +0.7 867,002 + MMP_RS04545 0.43 -0.1 867,002 + MMP_RS04545 0.43 +0.2 867,002 + MMP_RS04545 0.43 +3.9 867,002 + MMP_RS04545 0.43 +0.1 867,003 - MMP_RS04545 0.43 +0.2 867,003 - MMP_RS04545 0.43 -1.1 867,003 - MMP_RS04545 0.43 -0.0 867,004 + MMP_RS04545 0.43 +0.1 867,004 + MMP_RS04545 0.43 +0.3 867,004 + MMP_RS04545 0.43 -0.7 867,004 + MMP_RS04545 0.43 -0.2 867,036 - MMP_RS04545 0.47 +0.4 867,042 + MMP_RS04545 0.48 +0.3 867,061 - MMP_RS04545 0.50 +0.4 867,062 + MMP_RS04545 0.50 +0.1 867,062 + MMP_RS04545 0.50 -0.5 867,100 + MMP_RS04545 0.55 -0.9 867,100 + MMP_RS04545 0.55 +0.9 867,124 + MMP_RS04545 0.58 +0.1 867,137 - MMP_RS04545 0.60 -0.6 867,140 - MMP_RS04545 0.60 +0.8 867,141 + MMP_RS04545 0.60 +0.4 867,150 - MMP_RS04545 0.61 +0.5 867,150 - MMP_RS04545 0.61 +0.3 867,156 + MMP_RS04545 0.62 +0.4 867,180 - MMP_RS04545 0.65 -0.3 867,181 + MMP_RS04545 0.65 -0.6 867,181 + MMP_RS04545 0.65 +0.4 867,182 - MMP_RS04545 0.65 -0.5 867,182 - MMP_RS04545 0.65 -0.3 867,183 + MMP_RS04545 0.65 -0.1 867,186 - MMP_RS04545 0.66 +0.7 867,186 - MMP_RS04545 0.66 +0.2 867,186 - MMP_RS04545 0.66 -0.8 867,186 - MMP_RS04545 0.66 -0.0 867,187 + MMP_RS04545 0.66 -0.9 867,187 + MMP_RS04545 0.66 +4.2 867,187 + MMP_RS04545 0.66 -0.1 867,187 + MMP_RS04545 0.66 +2.7 867,261 + MMP_RS04545 0.75 +0.2 867,269 - MMP_RS04545 0.76 -0.2 867,326 - MMP_RS04545 0.83 +0.3 867,326 - MMP_RS04545 0.83 -0.4 867,326 - MMP_RS04545 0.83 +0.6 867,326 - MMP_RS04545 0.83 -0.1 867,364 - MMP_RS04545 0.88 +0.7 867,365 + MMP_RS04545 0.88 -0.0 867,555 + +0.2 867,555 + +0.6 867,568 - +0.5
Or see this region's nucleotide sequence