Experiment: McCas_formate_complete rubidium chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04360 and MMP_RS04365 are separated by 28 nucleotides MMP_RS04365 and MMP_RS04370 are separated by 11 nucleotides MMP_RS04370 and MMP_RS04375 are separated by 66 nucleotides
MMP_RS04360: MMP_RS04360 - hypothetical protein, at 833,119 to 833,310
_RS04360
MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007
_RS04365
MMP_RS04370: MMP_RS04370 - hypothetical protein, at 834,019 to 834,489
_RS04370
MMP_RS04375: MMP_RS04375 - TetR/AcrR family transcriptional regulator, at 834,556 to 835,146
_RS04375
Position (kb) 834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 833.019 kb on + strand at 833.020 kb on - strand at 833.021 kb on + strand at 833.023 kb on + strand at 833.023 kb on + strand at 833.023 kb on + strand at 833.027 kb on + strand at 833.055 kb on + strand at 833.103 kb on + strand at 833.178 kb on + strand, within MMP_RS04360 at 833.216 kb on - strand, within MMP_RS04360 at 833.216 kb on - strand, within MMP_RS04360 at 833.308 kb on - strand at 833.415 kb on - strand, within MMP_RS04365 at 833.416 kb on + strand, within MMP_RS04365 at 833.447 kb on - strand, within MMP_RS04365 at 833.447 kb on - strand, within MMP_RS04365 at 833.447 kb on - strand, within MMP_RS04365 at 833.448 kb on + strand, within MMP_RS04365 at 833.461 kb on - strand, within MMP_RS04365 at 833.540 kb on - strand, within MMP_RS04365 at 833.542 kb on - strand, within MMP_RS04365 at 833.557 kb on + strand, within MMP_RS04365 at 833.565 kb on + strand, within MMP_RS04365 at 833.568 kb on - strand, within MMP_RS04365 at 833.579 kb on - strand, within MMP_RS04365 at 833.582 kb on + strand, within MMP_RS04365 at 833.592 kb on - strand, within MMP_RS04365 at 833.592 kb on - strand, within MMP_RS04365 at 833.593 kb on + strand, within MMP_RS04365 at 833.616 kb on - strand, within MMP_RS04365 at 833.616 kb on - strand, within MMP_RS04365 at 833.617 kb on + strand, within MMP_RS04365 at 833.645 kb on - strand, within MMP_RS04365 at 833.646 kb on + strand, within MMP_RS04365 at 833.646 kb on + strand, within MMP_RS04365 at 833.737 kb on - strand, within MMP_RS04365 at 833.842 kb on + strand, within MMP_RS04365 at 833.875 kb on - strand, within MMP_RS04365 at 833.886 kb on - strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.910 kb on - strand, within MMP_RS04365 at 834.005 kb on - strand at 834.020 kb on - strand at 834.028 kb on - strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.031 kb on + strand at 834.033 kb on - strand at 834.101 kb on - strand, within MMP_RS04370 at 834.101 kb on - strand, within MMP_RS04370 at 834.110 kb on + strand, within MMP_RS04370 at 834.130 kb on - strand, within MMP_RS04370 at 834.130 kb on - strand, within MMP_RS04370 at 834.131 kb on + strand, within MMP_RS04370 at 834.131 kb on + strand, within MMP_RS04370 at 834.131 kb on + strand, within MMP_RS04370 at 834.132 kb on - strand, within MMP_RS04370 at 834.132 kb on - strand, within MMP_RS04370 at 834.133 kb on + strand, within MMP_RS04370 at 834.133 kb on + strand, within MMP_RS04370 at 834.150 kb on - strand, within MMP_RS04370 at 834.160 kb on - strand, within MMP_RS04370 at 834.160 kb on - strand, within MMP_RS04370 at 834.161 kb on + strand, within MMP_RS04370 at 834.161 kb on + strand, within MMP_RS04370 at 834.166 kb on + strand, within MMP_RS04370 at 834.166 kb on + strand, within MMP_RS04370 at 834.168 kb on + strand, within MMP_RS04370 at 834.186 kb on - strand, within MMP_RS04370 at 834.187 kb on + strand, within MMP_RS04370 at 834.212 kb on - strand, within MMP_RS04370 at 834.264 kb on - strand, within MMP_RS04370 at 834.264 kb on - strand, within MMP_RS04370 at 834.322 kb on - strand, within MMP_RS04370 at 834.322 kb on - strand, within MMP_RS04370 at 834.322 kb on - strand, within MMP_RS04370 at 834.323 kb on + strand, within MMP_RS04370 at 834.333 kb on - strand, within MMP_RS04370 at 834.339 kb on - strand, within MMP_RS04370 at 834.378 kb on - strand, within MMP_RS04370 at 834.426 kb on - strand, within MMP_RS04370 at 834.426 kb on - strand, within MMP_RS04370 at 834.426 kb on - strand, within MMP_RS04370 at 834.427 kb on + strand, within MMP_RS04370 at 834.427 kb on + strand, within MMP_RS04370 at 834.427 kb on + strand, within MMP_RS04370 at 834.431 kb on + strand, within MMP_RS04370 at 834.440 kb on - strand, within MMP_RS04370 at 834.478 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.567 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.725 kb on + strand, within MMP_RS04375 at 834.727 kb on - strand, within MMP_RS04375 at 834.728 kb on + strand, within MMP_RS04375 at 834.729 kb on - strand, within MMP_RS04375 at 834.730 kb on + strand, within MMP_RS04375 at 834.730 kb on + strand, within MMP_RS04375 at 834.740 kb on + strand, within MMP_RS04375 at 834.751 kb on - strand, within MMP_RS04375 at 834.751 kb on - strand, within MMP_RS04375 at 834.764 kb on - strand, within MMP_RS04375 at 834.765 kb on + strand, within MMP_RS04375 at 834.765 kb on + strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.768 kb on - strand at 834.768 kb on - strand, within MMP_RS04375 at 834.768 kb on - strand, within MMP_RS04375 at 834.768 kb on - strand, within MMP_RS04375 at 834.768 kb on - strand, within MMP_RS04375 at 834.769 kb on + strand, within MMP_RS04375 at 834.769 kb on + strand, within MMP_RS04375 at 834.769 kb on + strand, within MMP_RS04375 at 834.774 kb on - strand, within MMP_RS04375 at 834.778 kb on - strand, within MMP_RS04375 at 834.787 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.857 kb on - strand, within MMP_RS04375 at 834.869 kb on - strand, within MMP_RS04375 at 834.870 kb on + strand, within MMP_RS04375 at 834.870 kb on + strand, within MMP_RS04375 at 834.895 kb on + strand, within MMP_RS04375 at 834.928 kb on - strand, within MMP_RS04375 at 834.929 kb on + strand, within MMP_RS04375 at 834.949 kb on - strand, within MMP_RS04375 at 834.949 kb on - strand, within MMP_RS04375 at 834.949 kb on - strand, within MMP_RS04375 at 835.000 kb on - strand, within MMP_RS04375 at 835.001 kb on + strand, within MMP_RS04375 at 835.088 kb on - strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.140 kb on - strand at 835.151 kb on - strand at 835.152 kb on + strand at 835.154 kb on + strand at 835.176 kb on - strand at 835.176 kb on - strand at 835.177 kb on + strand at 835.179 kb on - strand at 835.179 kb on - strand at 835.180 kb on + strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.202 kb on + strand at 835.202 kb on + strand at 835.202 kb on + strand at 835.243 kb on - strand at 835.243 kb on - strand at 835.243 kb on - strand at 835.243 kb on - strand at 835.245 kb on - strand at 835.245 kb on - strand at 835.245 kb on - strand at 835.246 kb on + strand at 835.246 kb on + strand at 835.247 kb on - strand at 835.247 kb on - strand at 835.247 kb on - strand at 835.262 kb on - strand at 835.262 kb on - strand at 835.262 kb on - strand at 835.266 kb on - strand at 835.267 kb on + strand at 835.267 kb on + strand at 835.321 kb on + strand at 835.325 kb on - strand at 835.344 kb on - strand at 835.350 kb on - strand at 835.401 kb on - strand at 835.401 kb on - strand at 835.402 kb on + strand at 835.406 kb on - strand at 835.413 kb on - strand at 835.413 kb on - strand at 835.414 kb on + strand at 835.448 kb on + strand at 835.452 kb on - strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete rubidium chloride 62.5 mM remove 833,019 + +1.4 833,020 - +0.6 833,021 + -0.1 833,023 + +0.1 833,023 + +0.3 833,023 + +1.7 833,027 + -0.2 833,055 + -0.5 833,103 + -0.2 833,178 + MMP_RS04360 0.31 -0.5 833,216 - MMP_RS04360 0.51 -0.4 833,216 - MMP_RS04360 0.51 -0.6 833,308 - +0.1 833,415 - MMP_RS04365 0.11 +0.1 833,416 + MMP_RS04365 0.12 -0.5 833,447 - MMP_RS04365 0.16 +3.3 833,447 - MMP_RS04365 0.16 +0.1 833,447 - MMP_RS04365 0.16 -0.2 833,448 + MMP_RS04365 0.16 -0.3 833,461 - MMP_RS04365 0.18 +0.8 833,540 - MMP_RS04365 0.30 +0.6 833,542 - MMP_RS04365 0.30 -0.4 833,557 + MMP_RS04365 0.33 +0.4 833,565 + MMP_RS04365 0.34 +0.3 833,568 - MMP_RS04365 0.34 +2.8 833,579 - MMP_RS04365 0.36 -0.4 833,582 + MMP_RS04365 0.36 +0.7 833,592 - MMP_RS04365 0.38 -0.4 833,592 - MMP_RS04365 0.38 +0.5 833,593 + MMP_RS04365 0.38 -0.1 833,616 - MMP_RS04365 0.41 +0.4 833,616 - MMP_RS04365 0.41 -1.3 833,617 + MMP_RS04365 0.42 -1.1 833,645 - MMP_RS04365 0.46 +0.3 833,646 + MMP_RS04365 0.46 +0.6 833,646 + MMP_RS04365 0.46 +0.6 833,737 - MMP_RS04365 0.59 -0.3 833,842 + MMP_RS04365 0.75 -0.4 833,875 - MMP_RS04365 0.80 +0.1 833,886 - MMP_RS04365 0.82 -0.3 833,887 + MMP_RS04365 0.82 -0.3 833,887 + MMP_RS04365 0.82 -0.3 833,887 + MMP_RS04365 0.82 -0.0 833,910 - MMP_RS04365 0.85 -0.4 834,005 - +1.8 834,020 - -0.5 834,028 - -0.1 834,029 + +0.1 834,029 + -0.1 834,029 + -0.2 834,029 + +0.6 834,029 + +0.6 834,031 + +1.0 834,033 - +0.4 834,101 - MMP_RS04370 0.17 -1.9 834,101 - MMP_RS04370 0.17 -0.1 834,110 + MMP_RS04370 0.19 -0.4 834,130 - MMP_RS04370 0.24 -0.0 834,130 - MMP_RS04370 0.24 -0.3 834,131 + MMP_RS04370 0.24 -0.3 834,131 + MMP_RS04370 0.24 -0.2 834,131 + MMP_RS04370 0.24 -1.0 834,132 - MMP_RS04370 0.24 +0.2 834,132 - MMP_RS04370 0.24 -0.5 834,133 + MMP_RS04370 0.24 +1.2 834,133 + MMP_RS04370 0.24 -0.3 834,150 - MMP_RS04370 0.28 +0.3 834,160 - MMP_RS04370 0.30 +0.0 834,160 - MMP_RS04370 0.30 +0.4 834,161 + MMP_RS04370 0.30 +0.9 834,161 + MMP_RS04370 0.30 +0.3 834,166 + MMP_RS04370 0.31 -0.2 834,166 + MMP_RS04370 0.31 +0.7 834,168 + MMP_RS04370 0.32 -0.8 834,186 - MMP_RS04370 0.35 -0.8 834,187 + MMP_RS04370 0.36 +0.0 834,212 - MMP_RS04370 0.41 -0.0 834,264 - MMP_RS04370 0.52 +0.4 834,264 - MMP_RS04370 0.52 -0.7 834,322 - MMP_RS04370 0.64 -0.3 834,322 - MMP_RS04370 0.64 -1.6 834,322 - MMP_RS04370 0.64 +0.8 834,323 + MMP_RS04370 0.65 -0.3 834,333 - MMP_RS04370 0.67 +0.4 834,339 - MMP_RS04370 0.68 -0.2 834,378 - MMP_RS04370 0.76 -0.1 834,426 - MMP_RS04370 0.86 -1.3 834,426 - MMP_RS04370 0.86 -0.1 834,426 - MMP_RS04370 0.86 -0.5 834,427 + MMP_RS04370 0.87 -0.2 834,427 + MMP_RS04370 0.87 -0.1 834,427 + MMP_RS04370 0.87 -1.0 834,431 + MMP_RS04370 0.87 -0.5 834,440 - MMP_RS04370 0.89 +0.6 834,478 - +0.9 834,479 + -0.6 834,479 + -0.6 834,479 + +0.2 834,567 - -0.7 834,570 - +1.6 834,570 - -0.5 834,725 + MMP_RS04375 0.29 -0.9 834,727 - MMP_RS04375 0.29 +0.4 834,728 + MMP_RS04375 0.29 -0.8 834,729 - MMP_RS04375 0.29 -1.7 834,730 + MMP_RS04375 0.29 +4.6 834,730 + MMP_RS04375 0.29 +0.8 834,740 + MMP_RS04375 0.31 +0.2 834,751 - MMP_RS04375 0.33 -0.7 834,751 - MMP_RS04375 0.33 +0.2 834,764 - MMP_RS04375 0.35 -0.7 834,765 + MMP_RS04375 0.35 -0.1 834,765 + MMP_RS04375 0.35 -1.1 834,766 - MMP_RS04375 0.36 +1.5 834,766 - MMP_RS04375 0.36 -0.5 834,766 - MMP_RS04375 0.36 +1.4 834,766 - MMP_RS04375 0.36 -0.2 834,766 - MMP_RS04375 0.36 +0.8 834,766 - MMP_RS04375 0.36 +0.1 834,766 - MMP_RS04375 0.36 +2.8 834,766 - MMP_RS04375 0.36 -0.5 834,767 + MMP_RS04375 0.36 -0.9 834,767 + MMP_RS04375 0.36 +0.1 834,767 + MMP_RS04375 0.36 -0.3 834,767 + MMP_RS04375 0.36 +0.2 834,767 + MMP_RS04375 0.36 -0.4 834,767 + MMP_RS04375 0.36 +1.2 834,768 - +0.7 834,768 - MMP_RS04375 0.36 -0.1 834,768 - MMP_RS04375 0.36 -0.2 834,768 - MMP_RS04375 0.36 -0.0 834,768 - MMP_RS04375 0.36 -1.4 834,769 + MMP_RS04375 0.36 -0.3 834,769 + MMP_RS04375 0.36 -0.3 834,769 + MMP_RS04375 0.36 -0.1 834,774 - MMP_RS04375 0.37 +3.6 834,778 - MMP_RS04375 0.38 +2.7 834,787 - MMP_RS04375 0.39 -0.4 834,830 - MMP_RS04375 0.46 +0.2 834,830 - MMP_RS04375 0.46 +0.4 834,830 - MMP_RS04375 0.46 +0.3 834,830 - MMP_RS04375 0.46 -0.6 834,857 - MMP_RS04375 0.51 +0.4 834,869 - MMP_RS04375 0.53 +0.4 834,870 + MMP_RS04375 0.53 -0.1 834,870 + MMP_RS04375 0.53 -0.2 834,895 + MMP_RS04375 0.57 -0.7 834,928 - MMP_RS04375 0.63 +0.5 834,929 + MMP_RS04375 0.63 -0.3 834,949 - MMP_RS04375 0.66 -0.1 834,949 - MMP_RS04375 0.66 +0.3 834,949 - MMP_RS04375 0.66 -0.5 835,000 - MMP_RS04375 0.75 -0.6 835,001 + MMP_RS04375 0.75 +0.0 835,088 - -0.3 835,106 + +3.2 835,106 + +0.4 835,106 + +0.2 835,140 - -0.3 835,151 - -0.1 835,152 + -2.3 835,154 + -0.4 835,176 - +1.3 835,176 - +0.7 835,177 + -0.7 835,179 - +1.3 835,179 - -0.1 835,180 + +0.4 835,201 - +0.2 835,201 - -0.6 835,201 - +0.3 835,201 - -1.0 835,201 - -1.0 835,201 - +0.3 835,202 + -2.8 835,202 + -0.6 835,202 + +0.1 835,243 - +0.4 835,243 - +1.2 835,243 - +1.7 835,243 - -0.3 835,245 - -0.9 835,245 - -0.4 835,245 - -0.4 835,246 + +4.1 835,246 + +0.7 835,247 - -0.1 835,247 - +1.1 835,247 - +0.1 835,262 - -0.2 835,262 - +0.2 835,262 - -0.5 835,266 - -0.9 835,267 + -1.5 835,267 + +1.2 835,321 + -0.9 835,325 - -0.3 835,344 - +0.1 835,350 - +0.1 835,401 - -1.5 835,401 - -1.1 835,402 + +0.6 835,406 - +0.3 835,413 - -0.2 835,413 - -0.7 835,414 + +0.0 835,448 + -0.5 835,452 - +0.5 835,453 + +3.8 835,453 + -0.9 835,453 + +0.5 835,453 + +0.1 835,453 + -0.9 835,453 + -0.2 835,454 - -0.1 835,454 - +0.3 835,454 - +0.2 835,454 - +0.0 835,454 - -0.6 835,455 + -0.1 835,455 + +2.6 835,455 + +0.2 835,455 + +0.0 835,455 + -0.1 835,455 + -0.1 835,456 - +4.6 835,456 - -0.1 835,456 - -0.3 835,456 - +0.1 835,456 - +0.1 835,456 - -1.9 835,457 + -0.3 835,457 + -0.7 835,457 + +0.6 835,457 + +0.5 835,457 + +0.0 835,457 + +1.8 835,457 + -0.4 835,457 + -1.1 835,459 - -0.1
Or see this region's nucleotide sequence