Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04005

Experiment: McCas_formate_complete rubidium chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04000 and MMP_RS04005 are separated by 11 nucleotidesMMP_RS04005 and MMP_RS04010 are separated by 360 nucleotides MMP_RS04000: MMP_RS04000 - NAD(P)/FAD-dependent oxidoreductase, at 758,130 to 759,548 _RS04000 MMP_RS04005: MMP_RS04005 - hypothetical protein, at 759,560 to 761,332 _RS04005 MMP_RS04010: MMP_RS04010 - ABC transporter substrate-binding protein, at 761,693 to 762,445 _RS04010 Position (kb) 759 760 761 762Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 758.575 kb on + strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.615 kb on + strand, within MMP_RS04000at 758.641 kb on + strand, within MMP_RS04000at 758.646 kb on + strand, within MMP_RS04000at 758.646 kb on + strand, within MMP_RS04000at 758.655 kb on - strand, within MMP_RS04000at 758.828 kb on - strand, within MMP_RS04000at 758.829 kb on + strand, within MMP_RS04000at 758.835 kb on + strand, within MMP_RS04000at 758.841 kb on - strand, within MMP_RS04000at 758.844 kb on + strand, within MMP_RS04000at 758.903 kb on + strand, within MMP_RS04000at 759.082 kb on - strand, within MMP_RS04000at 759.083 kb on + strand, within MMP_RS04000at 759.083 kb on + strand, within MMP_RS04000at 759.103 kb on - strand, within MMP_RS04000at 759.103 kb on - strand, within MMP_RS04000at 759.126 kb on + strand, within MMP_RS04000at 759.147 kb on - strand, within MMP_RS04000at 759.178 kb on + strand, within MMP_RS04000at 759.179 kb on - strand, within MMP_RS04000at 759.237 kb on - strand, within MMP_RS04000at 759.238 kb on + strand, within MMP_RS04000at 759.272 kb on + strand, within MMP_RS04000at 759.274 kb on - strand, within MMP_RS04000at 759.274 kb on - strand, within MMP_RS04000at 759.275 kb on + strand, within MMP_RS04000at 759.276 kb on - strand, within MMP_RS04000at 759.277 kb on + strand, within MMP_RS04000at 759.277 kb on + strand, within MMP_RS04000at 759.316 kb on + strand, within MMP_RS04000at 759.340 kb on + strand, within MMP_RS04000at 759.349 kb on + strand, within MMP_RS04000at 759.417 kb on + strandat 759.447 kb on - strandat 759.458 kb on + strandat 759.485 kb on - strandat 759.490 kb on + strandat 759.568 kb on - strandat 759.573 kb on + strandat 759.701 kb on - strandat 759.840 kb on + strand, within MMP_RS04005at 759.841 kb on - strand, within MMP_RS04005at 759.841 kb on - strand, within MMP_RS04005at 759.860 kb on + strand, within MMP_RS04005at 759.882 kb on - strand, within MMP_RS04005at 759.887 kb on + strand, within MMP_RS04005at 759.933 kb on - strand, within MMP_RS04005at 759.974 kb on - strand, within MMP_RS04005at 759.974 kb on - strand, within MMP_RS04005at 759.974 kb on - strand, within MMP_RS04005at 759.975 kb on + strand, within MMP_RS04005at 759.975 kb on + strand, within MMP_RS04005at 759.975 kb on + strand, within MMP_RS04005at 760.013 kb on + strand, within MMP_RS04005at 760.015 kb on - strand, within MMP_RS04005at 760.015 kb on - strand, within MMP_RS04005at 760.058 kb on - strand, within MMP_RS04005at 760.058 kb on - strand, within MMP_RS04005at 760.058 kb on - strand, within MMP_RS04005at 760.059 kb on + strand, within MMP_RS04005at 760.066 kb on - strand, within MMP_RS04005at 760.066 kb on - strand, within MMP_RS04005at 760.068 kb on - strand, within MMP_RS04005at 760.170 kb on + strand, within MMP_RS04005at 760.210 kb on + strand, within MMP_RS04005at 760.231 kb on + strand, within MMP_RS04005at 760.323 kb on + strand, within MMP_RS04005at 760.330 kb on - strand, within MMP_RS04005at 760.331 kb on + strand, within MMP_RS04005at 760.384 kb on - strand, within MMP_RS04005at 760.417 kb on - strand, within MMP_RS04005at 760.418 kb on + strand, within MMP_RS04005at 760.435 kb on + strand, within MMP_RS04005at 760.435 kb on + strand, within MMP_RS04005at 760.485 kb on - strand, within MMP_RS04005at 760.486 kb on + strand, within MMP_RS04005at 760.486 kb on + strand, within MMP_RS04005at 760.577 kb on - strand, within MMP_RS04005at 760.577 kb on - strand, within MMP_RS04005at 760.630 kb on + strand, within MMP_RS04005at 760.634 kb on - strand, within MMP_RS04005at 760.653 kb on - strand, within MMP_RS04005at 760.690 kb on - strand, within MMP_RS04005at 760.710 kb on - strand, within MMP_RS04005at 760.711 kb on + strand, within MMP_RS04005at 760.714 kb on - strand, within MMP_RS04005at 760.715 kb on + strand, within MMP_RS04005at 760.721 kb on - strand, within MMP_RS04005at 760.746 kb on - strand, within MMP_RS04005at 760.757 kb on - strand, within MMP_RS04005at 760.819 kb on + strand, within MMP_RS04005at 760.819 kb on + strand, within MMP_RS04005at 760.870 kb on + strand, within MMP_RS04005at 760.889 kb on + strand, within MMP_RS04005at 760.893 kb on + strand, within MMP_RS04005at 760.992 kb on + strand, within MMP_RS04005at 761.051 kb on - strand, within MMP_RS04005at 761.147 kb on - strand, within MMP_RS04005at 761.147 kb on - strand, within MMP_RS04005at 761.148 kb on + strand, within MMP_RS04005at 761.148 kb on + strand, within MMP_RS04005at 761.148 kb on + strand, within MMP_RS04005at 761.168 kb on - strandat 761.195 kb on + strandat 761.235 kb on + strandat 761.235 kb on + strandat 761.238 kb on + strandat 761.244 kb on - strandat 761.257 kb on + strandat 761.321 kb on - strandat 761.322 kb on + strandat 761.355 kb on - strandat 761.355 kb on - strandat 761.355 kb on - strandat 761.356 kb on + strandat 761.356 kb on + strandat 761.419 kb on - strandat 761.419 kb on - strandat 761.420 kb on + strandat 761.442 kb on - strandat 761.443 kb on + strandat 761.479 kb on - strandat 761.483 kb on - strandat 761.520 kb on - strandat 761.520 kb on - strandat 761.520 kb on - strandat 761.521 kb on + strandat 761.522 kb on - strandat 761.522 kb on - strandat 761.523 kb on + strandat 761.523 kb on + strandat 761.537 kb on + strandat 761.540 kb on + strandat 761.552 kb on - strandat 761.560 kb on - strandat 761.561 kb on + strandat 761.562 kb on - strandat 761.562 kb on - strandat 761.562 kb on - strandat 761.563 kb on + strandat 761.563 kb on + strandat 761.591 kb on - strandat 761.593 kb on - strandat 761.593 kb on - strandat 761.594 kb on + strandat 761.600 kb on + strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.601 kb on - strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.602 kb on + strandat 761.605 kb on - strandat 761.605 kb on - strandat 761.606 kb on + strandat 761.606 kb on + strandat 761.632 kb on - strandat 761.633 kb on + strandat 761.633 kb on + strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.642 kb on - strandat 761.643 kb on + strandat 761.643 kb on + strandat 761.644 kb on - strandat 761.644 kb on - strandat 761.645 kb on + strandat 761.645 kb on + strandat 761.646 kb on - strandat 761.689 kb on - strandat 761.690 kb on + strandat 761.803 kb on - strand, within MMP_RS04010at 761.803 kb on - strand, within MMP_RS04010at 761.812 kb on + strand, within MMP_RS04010at 761.826 kb on + strand, within MMP_RS04010at 761.828 kb on + strand, within MMP_RS04010at 761.860 kb on + strand, within MMP_RS04010at 761.860 kb on + strand, within MMP_RS04010at 761.865 kb on - strand, within MMP_RS04010at 761.866 kb on + strand, within MMP_RS04010at 761.868 kb on - strand, within MMP_RS04010at 761.869 kb on + strand, within MMP_RS04010at 761.871 kb on + strand, within MMP_RS04010at 761.895 kb on - strand, within MMP_RS04010at 761.896 kb on + strand, within MMP_RS04010at 761.913 kb on - strand, within MMP_RS04010at 761.913 kb on - strand, within MMP_RS04010at 761.970 kb on - strand, within MMP_RS04010at 761.975 kb on - strand, within MMP_RS04010at 761.976 kb on + strand, within MMP_RS04010at 762.034 kb on - strand, within MMP_RS04010at 762.038 kb on - strand, within MMP_RS04010at 762.038 kb on - strand, within MMP_RS04010at 762.038 kb on - strand, within MMP_RS04010at 762.048 kb on - strand, within MMP_RS04010at 762.068 kb on + strand, within MMP_RS04010at 762.216 kb on - strand, within MMP_RS04010at 762.250 kb on - strand, within MMP_RS04010at 762.251 kb on + strand, within MMP_RS04010at 762.253 kb on - strand, within MMP_RS04010at 762.254 kb on + strand, within MMP_RS04010at 762.263 kb on - strand, within MMP_RS04010at 762.267 kb on - strand, within MMP_RS04010at 762.268 kb on + strand, within MMP_RS04010at 762.278 kb on - strand, within MMP_RS04010at 762.278 kb on - strand, within MMP_RS04010at 762.278 kb on - strand, within MMP_RS04010at 762.323 kb on - strand, within MMP_RS04010at 762.323 kb on - strand, within MMP_RS04010

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete rubidium chloride 62.5 mM
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758,575 + MMP_RS04000 0.31 -0.1
758,614 - MMP_RS04000 0.34 -0.1
758,614 - MMP_RS04000 0.34 +0.7
758,614 - MMP_RS04000 0.34 -0.2
758,615 + MMP_RS04000 0.34 +0.1
758,641 + MMP_RS04000 0.36 +2.6
758,646 + MMP_RS04000 0.36 +0.3
758,646 + MMP_RS04000 0.36 -0.5
758,655 - MMP_RS04000 0.37 -0.6
758,828 - MMP_RS04000 0.49 +1.3
758,829 + MMP_RS04000 0.49 -0.1
758,835 + MMP_RS04000 0.50 +0.2
758,841 - MMP_RS04000 0.50 -1.4
758,844 + MMP_RS04000 0.50 +0.1
758,903 + MMP_RS04000 0.54 +0.1
759,082 - MMP_RS04000 0.67 -0.5
759,083 + MMP_RS04000 0.67 -1.1
759,083 + MMP_RS04000 0.67 -0.1
759,103 - MMP_RS04000 0.69 -0.5
759,103 - MMP_RS04000 0.69 +0.0
759,126 + MMP_RS04000 0.70 -0.5
759,147 - MMP_RS04000 0.72 +0.6
759,178 + MMP_RS04000 0.74 +0.3
759,179 - MMP_RS04000 0.74 +1.0
759,237 - MMP_RS04000 0.78 +1.0
759,238 + MMP_RS04000 0.78 +0.1
759,272 + MMP_RS04000 0.80 +2.0
759,274 - MMP_RS04000 0.81 +0.7
759,274 - MMP_RS04000 0.81 -0.8
759,275 + MMP_RS04000 0.81 +0.2
759,276 - MMP_RS04000 0.81 +1.4
759,277 + MMP_RS04000 0.81 +0.9
759,277 + MMP_RS04000 0.81 -0.5
759,316 + MMP_RS04000 0.84 -1.4
759,340 + MMP_RS04000 0.85 +0.3
759,349 + MMP_RS04000 0.86 +0.5
759,417 + +3.8
759,447 - -0.1
759,458 + +2.0
759,485 - +0.1
759,490 + -0.1
759,568 - -0.8
759,573 + +0.2
759,701 - +2.5
759,840 + MMP_RS04005 0.16 -0.9
759,841 - MMP_RS04005 0.16 +0.1
759,841 - MMP_RS04005 0.16 +0.9
759,860 + MMP_RS04005 0.17 -1.0
759,882 - MMP_RS04005 0.18 -0.7
759,887 + MMP_RS04005 0.18 -0.5
759,933 - MMP_RS04005 0.21 -0.2
759,974 - MMP_RS04005 0.23 -0.6
759,974 - MMP_RS04005 0.23 -1.9
759,974 - MMP_RS04005 0.23 +1.0
759,975 + MMP_RS04005 0.23 -1.4
759,975 + MMP_RS04005 0.23 +0.7
759,975 + MMP_RS04005 0.23 +0.7
760,013 + MMP_RS04005 0.26 +0.5
760,015 - MMP_RS04005 0.26 +0.7
760,015 - MMP_RS04005 0.26 -1.0
760,058 - MMP_RS04005 0.28 +0.4
760,058 - MMP_RS04005 0.28 -0.4
760,058 - MMP_RS04005 0.28 -0.5
760,059 + MMP_RS04005 0.28 -0.1
760,066 - MMP_RS04005 0.29 -0.0
760,066 - MMP_RS04005 0.29 +2.1
760,068 - MMP_RS04005 0.29 -0.6
760,170 + MMP_RS04005 0.34 +0.6
760,210 + MMP_RS04005 0.37 -0.9
760,231 + MMP_RS04005 0.38 -0.6
760,323 + MMP_RS04005 0.43 -1.3
760,330 - MMP_RS04005 0.43 -0.2
760,331 + MMP_RS04005 0.43 +1.4
760,384 - MMP_RS04005 0.46 +0.5
760,417 - MMP_RS04005 0.48 -0.0
760,418 + MMP_RS04005 0.48 +0.4
760,435 + MMP_RS04005 0.49 +0.1
760,435 + MMP_RS04005 0.49 -0.4
760,485 - MMP_RS04005 0.52 +0.2
760,486 + MMP_RS04005 0.52 +0.1
760,486 + MMP_RS04005 0.52 +0.1
760,577 - MMP_RS04005 0.57 -0.1
760,577 - MMP_RS04005 0.57 -0.2
760,630 + MMP_RS04005 0.60 -0.4
760,634 - MMP_RS04005 0.61 -0.2
760,653 - MMP_RS04005 0.62 +0.1
760,690 - MMP_RS04005 0.64 -0.1
760,710 - MMP_RS04005 0.65 -1.0
760,711 + MMP_RS04005 0.65 +0.8
760,714 - MMP_RS04005 0.65 +0.5
760,715 + MMP_RS04005 0.65 +0.1
760,721 - MMP_RS04005 0.65 -0.6
760,746 - MMP_RS04005 0.67 +0.9
760,757 - MMP_RS04005 0.68 -0.1
760,819 + MMP_RS04005 0.71 -0.3
760,819 + MMP_RS04005 0.71 -2.2
760,870 + MMP_RS04005 0.74 +0.5
760,889 + MMP_RS04005 0.75 +0.0
760,893 + MMP_RS04005 0.75 +0.4
760,992 + MMP_RS04005 0.81 -0.2
761,051 - MMP_RS04005 0.84 -1.0
761,147 - MMP_RS04005 0.90 +0.4
761,147 - MMP_RS04005 0.90 -2.6
761,148 + MMP_RS04005 0.90 -1.0
761,148 + MMP_RS04005 0.90 -2.2
761,148 + MMP_RS04005 0.90 +0.1
761,168 - +1.7
761,195 + -0.7
761,235 + +0.4
761,235 + -2.5
761,238 + +1.3
761,244 - +2.2
761,257 + -0.5
761,321 - -0.3
761,322 + +0.3
761,355 - +0.3
761,355 - +0.4
761,355 - +2.2
761,356 + -0.9
761,356 + -0.7
761,419 - -0.6
761,419 - -1.3
761,420 + -0.3
761,442 - +0.1
761,443 + +0.2
761,479 - -0.3
761,483 - -0.1
761,520 - +0.2
761,520 - -2.5
761,520 - +0.2
761,521 + +0.4
761,522 - +0.4
761,522 - +0.2
761,523 + -0.8
761,523 + -0.5
761,537 + +0.3
761,540 + +0.2
761,552 - -1.0
761,560 - +0.1
761,561 + +0.0
761,562 - -0.2
761,562 - +0.4
761,562 - -0.3
761,563 + -0.4
761,563 + +0.2
761,591 - +0.1
761,593 - -0.7
761,593 - -0.2
761,594 + -0.2
761,600 + +0.3
761,601 - -1.0
761,601 - +3.9
761,601 - +0.1
761,601 - +0.6
761,601 - -0.9
761,602 + +0.4
761,602 + +0.8
761,602 + -0.2
761,602 + +0.2
761,602 + +0.1
761,605 - +0.6
761,605 - -1.1
761,606 + -1.0
761,606 + -0.5
761,632 - -0.5
761,633 + -0.4
761,633 + +0.3
761,642 - +0.2
761,642 - +0.2
761,642 - +0.2
761,642 - +0.4
761,642 - -0.0
761,643 + +0.3
761,643 + -0.1
761,644 - +1.2
761,644 - -0.9
761,645 + -0.6
761,645 + -0.1
761,646 - -0.6
761,689 - -0.4
761,690 + -0.5
761,803 - MMP_RS04010 0.15 +2.1
761,803 - MMP_RS04010 0.15 +0.4
761,812 + MMP_RS04010 0.16 +0.0
761,826 + MMP_RS04010 0.18 +0.5
761,828 + MMP_RS04010 0.18 -0.5
761,860 + MMP_RS04010 0.22 -0.7
761,860 + MMP_RS04010 0.22 +0.7
761,865 - MMP_RS04010 0.23 +0.1
761,866 + MMP_RS04010 0.23 +0.2
761,868 - MMP_RS04010 0.23 -0.0
761,869 + MMP_RS04010 0.23 -0.4
761,871 + MMP_RS04010 0.24 -2.0
761,895 - MMP_RS04010 0.27 -1.1
761,896 + MMP_RS04010 0.27 +0.5
761,913 - MMP_RS04010 0.29 -0.3
761,913 - MMP_RS04010 0.29 +0.5
761,970 - MMP_RS04010 0.37 +2.2
761,975 - MMP_RS04010 0.37 -0.5
761,976 + MMP_RS04010 0.38 -0.2
762,034 - MMP_RS04010 0.45 +0.5
762,038 - MMP_RS04010 0.46 +0.8
762,038 - MMP_RS04010 0.46 -0.4
762,038 - MMP_RS04010 0.46 +0.3
762,048 - MMP_RS04010 0.47 +3.2
762,068 + MMP_RS04010 0.50 -0.3
762,216 - MMP_RS04010 0.69 -0.2
762,250 - MMP_RS04010 0.74 +0.4
762,251 + MMP_RS04010 0.74 -0.6
762,253 - MMP_RS04010 0.74 -0.1
762,254 + MMP_RS04010 0.75 +0.5
762,263 - MMP_RS04010 0.76 -0.3
762,267 - MMP_RS04010 0.76 -0.9
762,268 + MMP_RS04010 0.76 -0.7
762,278 - MMP_RS04010 0.78 +0.1
762,278 - MMP_RS04010 0.78 +0.3
762,278 - MMP_RS04010 0.78 -0.6
762,323 - MMP_RS04010 0.84 -0.9
762,323 - MMP_RS04010 0.84 +0.0

Or see this region's nucleotide sequence