Experiment: McCas_formate_complete rubidium chloride 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04000 and MMP_RS04005 are separated by 11 nucleotides MMP_RS04005 and MMP_RS04010 are separated by 360 nucleotides
MMP_RS04000: MMP_RS04000 - NAD(P)/FAD-dependent oxidoreductase, at 758,130 to 759,548
_RS04000
MMP_RS04005: MMP_RS04005 - hypothetical protein, at 759,560 to 761,332
_RS04005
MMP_RS04010: MMP_RS04010 - ABC transporter substrate-binding protein, at 761,693 to 762,445
_RS04010
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 758.575 kb on + strand, within MMP_RS04000 at 758.614 kb on - strand, within MMP_RS04000 at 758.614 kb on - strand, within MMP_RS04000 at 758.614 kb on - strand, within MMP_RS04000 at 758.615 kb on + strand, within MMP_RS04000 at 758.641 kb on + strand, within MMP_RS04000 at 758.646 kb on + strand, within MMP_RS04000 at 758.646 kb on + strand, within MMP_RS04000 at 758.655 kb on - strand, within MMP_RS04000 at 758.828 kb on - strand, within MMP_RS04000 at 758.829 kb on + strand, within MMP_RS04000 at 758.835 kb on + strand, within MMP_RS04000 at 758.841 kb on - strand, within MMP_RS04000 at 758.844 kb on + strand, within MMP_RS04000 at 758.903 kb on + strand, within MMP_RS04000 at 759.082 kb on - strand, within MMP_RS04000 at 759.083 kb on + strand, within MMP_RS04000 at 759.083 kb on + strand, within MMP_RS04000 at 759.103 kb on - strand, within MMP_RS04000 at 759.103 kb on - strand, within MMP_RS04000 at 759.126 kb on + strand, within MMP_RS04000 at 759.147 kb on - strand, within MMP_RS04000 at 759.178 kb on + strand, within MMP_RS04000 at 759.179 kb on - strand, within MMP_RS04000 at 759.237 kb on - strand, within MMP_RS04000 at 759.238 kb on + strand, within MMP_RS04000 at 759.272 kb on + strand, within MMP_RS04000 at 759.274 kb on - strand, within MMP_RS04000 at 759.274 kb on - strand, within MMP_RS04000 at 759.275 kb on + strand, within MMP_RS04000 at 759.276 kb on - strand, within MMP_RS04000 at 759.277 kb on + strand, within MMP_RS04000 at 759.277 kb on + strand, within MMP_RS04000 at 759.316 kb on + strand, within MMP_RS04000 at 759.340 kb on + strand, within MMP_RS04000 at 759.349 kb on + strand, within MMP_RS04000 at 759.417 kb on + strand at 759.447 kb on - strand at 759.458 kb on + strand at 759.485 kb on - strand at 759.490 kb on + strand at 759.568 kb on - strand at 759.573 kb on + strand at 759.701 kb on - strand at 759.840 kb on + strand, within MMP_RS04005 at 759.841 kb on - strand, within MMP_RS04005 at 759.841 kb on - strand, within MMP_RS04005 at 759.860 kb on + strand, within MMP_RS04005 at 759.882 kb on - strand, within MMP_RS04005 at 759.887 kb on + strand, within MMP_RS04005 at 759.933 kb on - strand, within MMP_RS04005 at 759.974 kb on - strand, within MMP_RS04005 at 759.974 kb on - strand, within MMP_RS04005 at 759.974 kb on - strand, within MMP_RS04005 at 759.975 kb on + strand, within MMP_RS04005 at 759.975 kb on + strand, within MMP_RS04005 at 759.975 kb on + strand, within MMP_RS04005 at 760.013 kb on + strand, within MMP_RS04005 at 760.015 kb on - strand, within MMP_RS04005 at 760.015 kb on - strand, within MMP_RS04005 at 760.058 kb on - strand, within MMP_RS04005 at 760.058 kb on - strand, within MMP_RS04005 at 760.058 kb on - strand, within MMP_RS04005 at 760.059 kb on + strand, within MMP_RS04005 at 760.066 kb on - strand, within MMP_RS04005 at 760.066 kb on - strand, within MMP_RS04005 at 760.068 kb on - strand, within MMP_RS04005 at 760.170 kb on + strand, within MMP_RS04005 at 760.210 kb on + strand, within MMP_RS04005 at 760.231 kb on + strand, within MMP_RS04005 at 760.323 kb on + strand, within MMP_RS04005 at 760.330 kb on - strand, within MMP_RS04005 at 760.331 kb on + strand, within MMP_RS04005 at 760.384 kb on - strand, within MMP_RS04005 at 760.417 kb on - strand, within MMP_RS04005 at 760.418 kb on + strand, within MMP_RS04005 at 760.435 kb on + strand, within MMP_RS04005 at 760.435 kb on + strand, within MMP_RS04005 at 760.485 kb on - strand, within MMP_RS04005 at 760.486 kb on + strand, within MMP_RS04005 at 760.486 kb on + strand, within MMP_RS04005 at 760.577 kb on - strand, within MMP_RS04005 at 760.577 kb on - strand, within MMP_RS04005 at 760.630 kb on + strand, within MMP_RS04005 at 760.634 kb on - strand, within MMP_RS04005 at 760.653 kb on - strand, within MMP_RS04005 at 760.690 kb on - strand, within MMP_RS04005 at 760.710 kb on - strand, within MMP_RS04005 at 760.711 kb on + strand, within MMP_RS04005 at 760.714 kb on - strand, within MMP_RS04005 at 760.715 kb on + strand, within MMP_RS04005 at 760.721 kb on - strand, within MMP_RS04005 at 760.746 kb on - strand, within MMP_RS04005 at 760.757 kb on - strand, within MMP_RS04005 at 760.819 kb on + strand, within MMP_RS04005 at 760.819 kb on + strand, within MMP_RS04005 at 760.870 kb on + strand, within MMP_RS04005 at 760.889 kb on + strand, within MMP_RS04005 at 760.893 kb on + strand, within MMP_RS04005 at 760.992 kb on + strand, within MMP_RS04005 at 761.051 kb on - strand, within MMP_RS04005 at 761.147 kb on - strand, within MMP_RS04005 at 761.147 kb on - strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.148 kb on + strand, within MMP_RS04005 at 761.168 kb on - strand at 761.195 kb on + strand at 761.235 kb on + strand at 761.235 kb on + strand at 761.238 kb on + strand at 761.244 kb on - strand at 761.257 kb on + strand at 761.321 kb on - strand at 761.322 kb on + strand at 761.355 kb on - strand at 761.355 kb on - strand at 761.355 kb on - strand at 761.356 kb on + strand at 761.356 kb on + strand at 761.419 kb on - strand at 761.419 kb on - strand at 761.420 kb on + strand at 761.442 kb on - strand at 761.443 kb on + strand at 761.479 kb on - strand at 761.483 kb on - strand at 761.520 kb on - strand at 761.520 kb on - strand at 761.520 kb on - strand at 761.521 kb on + strand at 761.522 kb on - strand at 761.522 kb on - strand at 761.523 kb on + strand at 761.523 kb on + strand at 761.537 kb on + strand at 761.540 kb on + strand at 761.552 kb on - strand at 761.560 kb on - strand at 761.561 kb on + strand at 761.562 kb on - strand at 761.562 kb on - strand at 761.562 kb on - strand at 761.563 kb on + strand at 761.563 kb on + strand at 761.591 kb on - strand at 761.593 kb on - strand at 761.593 kb on - strand at 761.594 kb on + strand at 761.600 kb on + strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.601 kb on - strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.602 kb on + strand at 761.605 kb on - strand at 761.605 kb on - strand at 761.606 kb on + strand at 761.606 kb on + strand at 761.632 kb on - strand at 761.633 kb on + strand at 761.633 kb on + strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.642 kb on - strand at 761.643 kb on + strand at 761.643 kb on + strand at 761.644 kb on - strand at 761.644 kb on - strand at 761.645 kb on + strand at 761.645 kb on + strand at 761.646 kb on - strand at 761.689 kb on - strand at 761.690 kb on + strand at 761.803 kb on - strand, within MMP_RS04010 at 761.803 kb on - strand, within MMP_RS04010 at 761.812 kb on + strand, within MMP_RS04010 at 761.826 kb on + strand, within MMP_RS04010 at 761.828 kb on + strand, within MMP_RS04010 at 761.860 kb on + strand, within MMP_RS04010 at 761.860 kb on + strand, within MMP_RS04010 at 761.865 kb on - strand, within MMP_RS04010 at 761.866 kb on + strand, within MMP_RS04010 at 761.868 kb on - strand, within MMP_RS04010 at 761.869 kb on + strand, within MMP_RS04010 at 761.871 kb on + strand, within MMP_RS04010 at 761.895 kb on - strand, within MMP_RS04010 at 761.896 kb on + strand, within MMP_RS04010 at 761.913 kb on - strand, within MMP_RS04010 at 761.913 kb on - strand, within MMP_RS04010 at 761.970 kb on - strand, within MMP_RS04010 at 761.975 kb on - strand, within MMP_RS04010 at 761.976 kb on + strand, within MMP_RS04010 at 762.034 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.048 kb on - strand, within MMP_RS04010 at 762.068 kb on + strand, within MMP_RS04010 at 762.216 kb on - strand, within MMP_RS04010 at 762.250 kb on - strand, within MMP_RS04010 at 762.251 kb on + strand, within MMP_RS04010 at 762.253 kb on - strand, within MMP_RS04010 at 762.254 kb on + strand, within MMP_RS04010 at 762.263 kb on - strand, within MMP_RS04010 at 762.267 kb on - strand, within MMP_RS04010 at 762.268 kb on + strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete rubidium chloride 62.5 mM remove 758,575 + MMP_RS04000 0.31 -0.1 758,614 - MMP_RS04000 0.34 -0.1 758,614 - MMP_RS04000 0.34 +0.7 758,614 - MMP_RS04000 0.34 -0.2 758,615 + MMP_RS04000 0.34 +0.1 758,641 + MMP_RS04000 0.36 +2.6 758,646 + MMP_RS04000 0.36 +0.3 758,646 + MMP_RS04000 0.36 -0.5 758,655 - MMP_RS04000 0.37 -0.6 758,828 - MMP_RS04000 0.49 +1.3 758,829 + MMP_RS04000 0.49 -0.1 758,835 + MMP_RS04000 0.50 +0.2 758,841 - MMP_RS04000 0.50 -1.4 758,844 + MMP_RS04000 0.50 +0.1 758,903 + MMP_RS04000 0.54 +0.1 759,082 - MMP_RS04000 0.67 -0.5 759,083 + MMP_RS04000 0.67 -1.1 759,083 + MMP_RS04000 0.67 -0.1 759,103 - MMP_RS04000 0.69 -0.5 759,103 - MMP_RS04000 0.69 +0.0 759,126 + MMP_RS04000 0.70 -0.5 759,147 - MMP_RS04000 0.72 +0.6 759,178 + MMP_RS04000 0.74 +0.3 759,179 - MMP_RS04000 0.74 +1.0 759,237 - MMP_RS04000 0.78 +1.0 759,238 + MMP_RS04000 0.78 +0.1 759,272 + MMP_RS04000 0.80 +2.0 759,274 - MMP_RS04000 0.81 +0.7 759,274 - MMP_RS04000 0.81 -0.8 759,275 + MMP_RS04000 0.81 +0.2 759,276 - MMP_RS04000 0.81 +1.4 759,277 + MMP_RS04000 0.81 +0.9 759,277 + MMP_RS04000 0.81 -0.5 759,316 + MMP_RS04000 0.84 -1.4 759,340 + MMP_RS04000 0.85 +0.3 759,349 + MMP_RS04000 0.86 +0.5 759,417 + +3.8 759,447 - -0.1 759,458 + +2.0 759,485 - +0.1 759,490 + -0.1 759,568 - -0.8 759,573 + +0.2 759,701 - +2.5 759,840 + MMP_RS04005 0.16 -0.9 759,841 - MMP_RS04005 0.16 +0.1 759,841 - MMP_RS04005 0.16 +0.9 759,860 + MMP_RS04005 0.17 -1.0 759,882 - MMP_RS04005 0.18 -0.7 759,887 + MMP_RS04005 0.18 -0.5 759,933 - MMP_RS04005 0.21 -0.2 759,974 - MMP_RS04005 0.23 -0.6 759,974 - MMP_RS04005 0.23 -1.9 759,974 - MMP_RS04005 0.23 +1.0 759,975 + MMP_RS04005 0.23 -1.4 759,975 + MMP_RS04005 0.23 +0.7 759,975 + MMP_RS04005 0.23 +0.7 760,013 + MMP_RS04005 0.26 +0.5 760,015 - MMP_RS04005 0.26 +0.7 760,015 - MMP_RS04005 0.26 -1.0 760,058 - MMP_RS04005 0.28 +0.4 760,058 - MMP_RS04005 0.28 -0.4 760,058 - MMP_RS04005 0.28 -0.5 760,059 + MMP_RS04005 0.28 -0.1 760,066 - MMP_RS04005 0.29 -0.0 760,066 - MMP_RS04005 0.29 +2.1 760,068 - MMP_RS04005 0.29 -0.6 760,170 + MMP_RS04005 0.34 +0.6 760,210 + MMP_RS04005 0.37 -0.9 760,231 + MMP_RS04005 0.38 -0.6 760,323 + MMP_RS04005 0.43 -1.3 760,330 - MMP_RS04005 0.43 -0.2 760,331 + MMP_RS04005 0.43 +1.4 760,384 - MMP_RS04005 0.46 +0.5 760,417 - MMP_RS04005 0.48 -0.0 760,418 + MMP_RS04005 0.48 +0.4 760,435 + MMP_RS04005 0.49 +0.1 760,435 + MMP_RS04005 0.49 -0.4 760,485 - MMP_RS04005 0.52 +0.2 760,486 + MMP_RS04005 0.52 +0.1 760,486 + MMP_RS04005 0.52 +0.1 760,577 - MMP_RS04005 0.57 -0.1 760,577 - MMP_RS04005 0.57 -0.2 760,630 + MMP_RS04005 0.60 -0.4 760,634 - MMP_RS04005 0.61 -0.2 760,653 - MMP_RS04005 0.62 +0.1 760,690 - MMP_RS04005 0.64 -0.1 760,710 - MMP_RS04005 0.65 -1.0 760,711 + MMP_RS04005 0.65 +0.8 760,714 - MMP_RS04005 0.65 +0.5 760,715 + MMP_RS04005 0.65 +0.1 760,721 - MMP_RS04005 0.65 -0.6 760,746 - MMP_RS04005 0.67 +0.9 760,757 - MMP_RS04005 0.68 -0.1 760,819 + MMP_RS04005 0.71 -0.3 760,819 + MMP_RS04005 0.71 -2.2 760,870 + MMP_RS04005 0.74 +0.5 760,889 + MMP_RS04005 0.75 +0.0 760,893 + MMP_RS04005 0.75 +0.4 760,992 + MMP_RS04005 0.81 -0.2 761,051 - MMP_RS04005 0.84 -1.0 761,147 - MMP_RS04005 0.90 +0.4 761,147 - MMP_RS04005 0.90 -2.6 761,148 + MMP_RS04005 0.90 -1.0 761,148 + MMP_RS04005 0.90 -2.2 761,148 + MMP_RS04005 0.90 +0.1 761,168 - +1.7 761,195 + -0.7 761,235 + +0.4 761,235 + -2.5 761,238 + +1.3 761,244 - +2.2 761,257 + -0.5 761,321 - -0.3 761,322 + +0.3 761,355 - +0.3 761,355 - +0.4 761,355 - +2.2 761,356 + -0.9 761,356 + -0.7 761,419 - -0.6 761,419 - -1.3 761,420 + -0.3 761,442 - +0.1 761,443 + +0.2 761,479 - -0.3 761,483 - -0.1 761,520 - +0.2 761,520 - -2.5 761,520 - +0.2 761,521 + +0.4 761,522 - +0.4 761,522 - +0.2 761,523 + -0.8 761,523 + -0.5 761,537 + +0.3 761,540 + +0.2 761,552 - -1.0 761,560 - +0.1 761,561 + +0.0 761,562 - -0.2 761,562 - +0.4 761,562 - -0.3 761,563 + -0.4 761,563 + +0.2 761,591 - +0.1 761,593 - -0.7 761,593 - -0.2 761,594 + -0.2 761,600 + +0.3 761,601 - -1.0 761,601 - +3.9 761,601 - +0.1 761,601 - +0.6 761,601 - -0.9 761,602 + +0.4 761,602 + +0.8 761,602 + -0.2 761,602 + +0.2 761,602 + +0.1 761,605 - +0.6 761,605 - -1.1 761,606 + -1.0 761,606 + -0.5 761,632 - -0.5 761,633 + -0.4 761,633 + +0.3 761,642 - +0.2 761,642 - +0.2 761,642 - +0.2 761,642 - +0.4 761,642 - -0.0 761,643 + +0.3 761,643 + -0.1 761,644 - +1.2 761,644 - -0.9 761,645 + -0.6 761,645 + -0.1 761,646 - -0.6 761,689 - -0.4 761,690 + -0.5 761,803 - MMP_RS04010 0.15 +2.1 761,803 - MMP_RS04010 0.15 +0.4 761,812 + MMP_RS04010 0.16 +0.0 761,826 + MMP_RS04010 0.18 +0.5 761,828 + MMP_RS04010 0.18 -0.5 761,860 + MMP_RS04010 0.22 -0.7 761,860 + MMP_RS04010 0.22 +0.7 761,865 - MMP_RS04010 0.23 +0.1 761,866 + MMP_RS04010 0.23 +0.2 761,868 - MMP_RS04010 0.23 -0.0 761,869 + MMP_RS04010 0.23 -0.4 761,871 + MMP_RS04010 0.24 -2.0 761,895 - MMP_RS04010 0.27 -1.1 761,896 + MMP_RS04010 0.27 +0.5 761,913 - MMP_RS04010 0.29 -0.3 761,913 - MMP_RS04010 0.29 +0.5 761,970 - MMP_RS04010 0.37 +2.2 761,975 - MMP_RS04010 0.37 -0.5 761,976 + MMP_RS04010 0.38 -0.2 762,034 - MMP_RS04010 0.45 +0.5 762,038 - MMP_RS04010 0.46 +0.8 762,038 - MMP_RS04010 0.46 -0.4 762,038 - MMP_RS04010 0.46 +0.3 762,048 - MMP_RS04010 0.47 +3.2 762,068 + MMP_RS04010 0.50 -0.3 762,216 - MMP_RS04010 0.69 -0.2 762,250 - MMP_RS04010 0.74 +0.4 762,251 + MMP_RS04010 0.74 -0.6 762,253 - MMP_RS04010 0.74 -0.1 762,254 + MMP_RS04010 0.75 +0.5 762,263 - MMP_RS04010 0.76 -0.3 762,267 - MMP_RS04010 0.76 -0.9 762,268 + MMP_RS04010 0.76 -0.7 762,278 - MMP_RS04010 0.78 +0.1 762,278 - MMP_RS04010 0.78 +0.3 762,278 - MMP_RS04010 0.78 -0.6 762,323 - MMP_RS04010 0.84 -0.9 762,323 - MMP_RS04010 0.84 +0.0
Or see this region's nucleotide sequence