Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00090

Experiment: McCas_formate_complete rubidium chloride 62.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00085 and MMP_RS00090 are separated by 69 nucleotidesMMP_RS00090 and MMP_RS00095 are separated by 41 nucleotides MMP_RS00085: MMP_RS00085 - DNA cytosine methyltransferase, at 20,974 to 22,041 _RS00085 MMP_RS00090: MMP_RS00090 - CoA-binding protein, at 22,111 to 22,560 _RS00090 MMP_RS00095: MMP_RS00095 - argininosuccinate lyase, at 22,602 to 24,047 _RS00095 Position (kb) 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.128 kb on + strand, within MMP_RS00085at 21.209 kb on - strand, within MMP_RS00085at 21.271 kb on + strand, within MMP_RS00085at 21.518 kb on - strand, within MMP_RS00085at 21.523 kb on - strand, within MMP_RS00085at 21.567 kb on - strand, within MMP_RS00085at 21.588 kb on + strand, within MMP_RS00085at 21.692 kb on + strand, within MMP_RS00085at 21.713 kb on - strand, within MMP_RS00085at 21.721 kb on + strand, within MMP_RS00085at 21.743 kb on - strand, within MMP_RS00085at 21.763 kb on - strand, within MMP_RS00085at 21.779 kb on + strand, within MMP_RS00085at 21.826 kb on - strand, within MMP_RS00085at 21.826 kb on - strand, within MMP_RS00085at 21.827 kb on + strand, within MMP_RS00085at 21.827 kb on + strand, within MMP_RS00085at 22.073 kb on - strandat 22.073 kb on - strandat 22.074 kb on + strandat 22.075 kb on - strandat 22.075 kb on - strandat 22.075 kb on - strandat 22.076 kb on + strandat 22.076 kb on + strandat 22.076 kb on + strandat 22.076 kb on + strandat 22.076 kb on + strandat 22.089 kb on - strandat 22.109 kb on + strandat 22.109 kb on + strandat 22.128 kb on - strandat 22.128 kb on - strandat 22.128 kb on - strandat 22.158 kb on + strand, within MMP_RS00090at 22.259 kb on + strand, within MMP_RS00090at 22.279 kb on + strand, within MMP_RS00090at 22.279 kb on + strand, within MMP_RS00090at 22.334 kb on - strand, within MMP_RS00090at 22.335 kb on + strand, within MMP_RS00090at 22.335 kb on + strand, within MMP_RS00090at 22.337 kb on + strand, within MMP_RS00090at 22.540 kb on + strandat 22.576 kb on + strandat 23.139 kb on + strandat 23.160 kb on - strandat 23.160 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete rubidium chloride 62.5 mM
remove
21,128 + MMP_RS00085 0.14 +0.3
21,209 - MMP_RS00085 0.22 -0.4
21,271 + MMP_RS00085 0.28 -3.6
21,518 - MMP_RS00085 0.51 +0.2
21,523 - MMP_RS00085 0.51 -0.1
21,567 - MMP_RS00085 0.56 -0.8
21,588 + MMP_RS00085 0.57 +0.6
21,692 + MMP_RS00085 0.67 +0.4
21,713 - MMP_RS00085 0.69 +0.8
21,721 + MMP_RS00085 0.70 -0.7
21,743 - MMP_RS00085 0.72 -0.2
21,763 - MMP_RS00085 0.74 -0.2
21,779 + MMP_RS00085 0.75 -0.1
21,826 - MMP_RS00085 0.80 -0.0
21,826 - MMP_RS00085 0.80 -0.5
21,827 + MMP_RS00085 0.80 -0.7
21,827 + MMP_RS00085 0.80 +2.0
22,073 - +0.2
22,073 - -0.0
22,074 + -0.2
22,075 - +0.5
22,075 - -0.5
22,075 - +1.2
22,076 + +1.1
22,076 + +0.4
22,076 + -0.6
22,076 + +0.0
22,076 + +0.4
22,089 - +0.1
22,109 + -0.3
22,109 + -0.6
22,128 - -0.4
22,128 - -0.6
22,128 - +0.1
22,158 + MMP_RS00090 0.10 -0.6
22,259 + MMP_RS00090 0.33 +0.4
22,279 + MMP_RS00090 0.37 +0.5
22,279 + MMP_RS00090 0.37 -1.1
22,334 - MMP_RS00090 0.50 +0.8
22,335 + MMP_RS00090 0.50 -0.1
22,335 + MMP_RS00090 0.50 -0.2
22,337 + MMP_RS00090 0.50 -0.7
22,540 + -0.0
22,576 + -0.6
23,139 + -2.9
23,160 - -1.2
23,160 - +0.4

Or see this region's nucleotide sequence