Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10040

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,207,884	+		LRK54_RS10035	0.75	-0.4
2,207,903	+		LRK54_RS10035	0.76	+0.6
2,207,903	+		LRK54_RS10035	0.76	-0.1
2,207,903	+		LRK54_RS10035	0.76	+0.1
2,207,903	+		LRK54_RS10035	0.76	-0.9
2,207,903	+		LRK54_RS10035	0.76	-0.4
2,207,903	+		LRK54_RS10035	0.76	-1.1
2,207,903	+		LRK54_RS10035	0.76	-0.2
2,207,903	+		LRK54_RS10035	0.76	+0.0
2,207,903	+		LRK54_RS10035	0.76	+1.3
2,207,903	+		LRK54_RS10035	0.76	+0.1
2,207,903	+		LRK54_RS10035	0.76	-1.4
2,207,904	-		LRK54_RS10035	0.76	-1.1
2,207,915	-		LRK54_RS10035	0.77	-0.2
2,207,915	-		LRK54_RS10035	0.77	+0.4
2,207,969	+		LRK54_RS10035	0.80	+0.1
2,207,969	+		LRK54_RS10035	0.80	-0.1
2,207,970	-		LRK54_RS10035	0.80	-0.7
2,207,970	-		LRK54_RS10035	0.80	-0.9
2,207,970	-		LRK54_RS10035	0.80	-0.8
2,207,970	-		LRK54_RS10035	0.80	+0.1
2,208,051	-		LRK54_RS10035	0.84	+1.1
2,208,051	-		LRK54_RS10035	0.84	-0.6
2,208,051	-		LRK54_RS10035	0.84	+0.1
2,208,051	-		LRK54_RS10035	0.84	-0.4
2,208,051	-		LRK54_RS10035	0.84	+0.8
2,208,051	-		LRK54_RS10035	0.84	-1.0
2,208,051	-		LRK54_RS10035	0.84	-0.1
2,208,063	-		LRK54_RS10035	0.84	-0.4
2,208,063	-		LRK54_RS10035	0.84	-0.7
2,208,063	-		LRK54_RS10035	0.84	-0.0
2,208,063	-		LRK54_RS10035	0.84	+0.7
2,208,063	-		LRK54_RS10035	0.84	+0.9
2,208,063	-		LRK54_RS10035	0.84	-0.4
2,208,063	-		LRK54_RS10035	0.84	-0.7
2,208,063	-		LRK54_RS10035	0.84	+4.4
2,208,063	-		LRK54_RS10035	0.84	+0.5
2,208,063	-		LRK54_RS10035	0.84	-0.4
2,208,063	-		LRK54_RS10035	0.84	+0.0
2,208,063	-		LRK54_RS10035	0.84	-0.3
2,208,063	-		LRK54_RS10035	0.84	-0.1
2,208,063	-		LRK54_RS10035	0.84	-0.5
2,208,063	-		LRK54_RS10035	0.84	-0.0
2,208,063	-		LRK54_RS10035	0.84	-2.0
2,208,063	-		LRK54_RS10035	0.84	+0.0
2,208,063	-		LRK54_RS10035	0.84	-0.3
2,208,063	-		LRK54_RS10035	0.84	-1.5
2,208,063	-		LRK54_RS10035	0.84	-0.1
2,208,063	-		LRK54_RS10035	0.84	-0.4
2,208,063	-		LRK54_RS10035	0.84	-1.1
2,208,113	+		LRK54_RS10035	0.87	-1.2
2,208,113	+		LRK54_RS10035	0.87	-0.3
2,208,113	+		LRK54_RS10035	0.87	+0.3
2,208,114	-		LRK54_RS10035	0.87	-0.1
2,208,114	-		LRK54_RS10035	0.87	-0.9
2,208,114	-		LRK54_RS10035	0.87	+0.6
2,208,114	-		LRK54_RS10035	0.87	+0.1
2,208,114	-		LRK54_RS10035	0.87	-0.7
2,208,170	+		LRK54_RS10035	0.89	-0.6
2,208,170	+		LRK54_RS10035	0.89	-0.1
2,208,170	+		LRK54_RS10035	0.89	-0.3
2,208,170	+		LRK54_RS10035	0.89	+0.0
2,208,171	-		LRK54_RS10035	0.89	-1.4
2,208,171	-		LRK54_RS10035	0.89	+0.6
2,208,171	-		LRK54_RS10035	0.89	+0.5
2,208,171	-		LRK54_RS10035	0.89	+0.8
2,208,171	-		LRK54_RS10035	0.89	-0.2
2,208,171	-		LRK54_RS10035	0.89	-1.0
2,208,234	-				-0.4
2,208,234	-				-0.4
2,208,245	+				-1.0
2,208,246	-				-3.1
2,208,301	+				-0.8
2,208,385	+				-0.0
2,208,385	+				-0.7
2,208,385	+				+0.6
2,208,385	+				+0.2
2,208,385	+				-0.0
2,208,385	+				-2.2
2,208,385	+				-0.4
2,208,385	+				+0.9
2,208,385	+				+0.2
2,208,385	+				+1.1
2,208,385	+				-1.2
2,208,385	+				-0.8
2,208,385	+				-0.5
2,208,385	+				-0.0
2,208,386	-				+0.9
2,208,386	-				+2.0
2,208,386	-				+0.2
2,208,386	-				+0.3
2,208,386	-				+0.8
2,208,386	-				+0.8
2,208,386	-				+0.7
2,208,386	-				+0.6
2,208,386	-				-0.4
2,208,386	-				+1.0
2,208,629	-				-0.7
2,208,629	-				+0.2
2,208,629	-				-0.1
2,208,655	-				+1.9
2,208,655	-				+1.5
2,208,724	-				-0.9
2,208,728	-				-0.1
2,208,806	+				+0.4
2,208,930	+		LRK54_RS10040	0.17	+0.1
2,208,930	+		LRK54_RS10040	0.17	+0.6
2,208,930	+		LRK54_RS10040	0.17	+0.7
2,208,930	+		LRK54_RS10040	0.17	-0.0
2,208,930	+		LRK54_RS10040	0.17	-0.8
2,208,931	-		LRK54_RS10040	0.18	+1.6
2,208,931	-		LRK54_RS10040	0.18	-1.4
2,208,931	-		LRK54_RS10040	0.18	+1.4
2,208,931	-		LRK54_RS10040	0.18	+0.4
2,208,970	+		LRK54_RS10040	0.33	-1.2
2,208,971	-		LRK54_RS10040	0.33	-0.2
2,208,971	-		LRK54_RS10040	0.33	+0.5
2,208,971	-		LRK54_RS10040	0.33	-0.4
2,208,971	-		LRK54_RS10040	0.33	+0.4
2,208,971	-		LRK54_RS10040	0.33	+0.4
2,208,972	+		LRK54_RS10040	0.33	+0.2
2,208,972	+		LRK54_RS10040	0.33	-0.5
2,208,973	-		LRK54_RS10040	0.34	+1.7
2,209,044	+		LRK54_RS10040	0.61	-1.6
2,209,246	+				-0.1
2,209,246	+				-0.9
2,209,246	+				+0.1
2,209,247	-				+0.4
2,209,247	-				-0.2
2,209,247	-				-1.4
2,209,247	-				+0.8
2,209,247	-				+0.1
2,209,247	-				+0.3
2,209,247	-				-0.6
2,209,247	-				-0.4
2,209,247	-				+0.6
2,209,247	-				+0.7
2,209,247	-				+0.6
2,209,247	-				+0.2
2,209,247	-				+1.3
2,209,346	-		LRK54_RS10045	0.16	-1.0
2,209,870	+		LRK54_RS10045	0.59	+0.9
2,209,870	+		LRK54_RS10045	0.59	+1.2
2,209,870	+		LRK54_RS10045	0.59	+0.5
2,209,871	-		LRK54_RS10045	0.59	+0.1
2,209,871	-		LRK54_RS10045	0.59	+0.4
2,209,871	-		LRK54_RS10045	0.59	-0.7
2,209,871	-		LRK54_RS10045	0.59	-0.2
2,209,871	-		LRK54_RS10045	0.59	+1.0
2,209,871	-		LRK54_RS10045	0.59	+1.1
2,209,871	-		LRK54_RS10045	0.59	+0.5
2,209,871	-		LRK54_RS10045	0.59	-0.6
2,209,894	+		LRK54_RS10045	0.61	+0.2
2,209,894	+		LRK54_RS10045	0.61	+0.1
2,209,894	+		LRK54_RS10045	0.61	+0.3
2,209,894	+		LRK54_RS10045	0.61	-1.0
2,209,895	-		LRK54_RS10045	0.61	+0.6
2,209,895	-		LRK54_RS10045	0.61	-0.6
2,209,895	-		LRK54_RS10045	0.61	-1.4
2,209,895	-		LRK54_RS10045	0.61	-0.0
2,209,895	-		LRK54_RS10045	0.61	-0.0
2,209,895	-		LRK54_RS10045	0.61	+0.9
2,209,895	-		LRK54_RS10045	0.61	+1.7