Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03845 and MMP_RS08990 are separated by 27 nucleotides MMP_RS08990 and MMP_RS03850 are separated by 125 nucleotides MMP_RS03850 and MMP_RS03855 are separated by 24 nucleotides
MMP_RS03845: MMP_RS03845 - DNA adenine methylase, at 727,879 to 728,799
_RS03845
MMP_RS08990: MMP_RS08990 - hypothetical protein, at 728,827 to 728,997
_RS08990
MMP_RS03850: MMP_RS03850 - PRC-barrel domain-containing protein, at 729,123 to 729,377
_RS03850
MMP_RS03855: MMP_RS03855 - aspartate dehydrogenase, at 729,402 to 730,205
_RS03855
Position (kb) 728
729 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 727.848 kb on + strand at 727.873 kb on - strand at 727.878 kb on - strand at 727.879 kb on + strand at 728.024 kb on + strand, within MMP_RS03845 at 728.075 kb on - strand, within MMP_RS03845 at 728.198 kb on + strand, within MMP_RS03845 at 728.219 kb on + strand, within MMP_RS03845 at 728.323 kb on + strand, within MMP_RS03845 at 728.382 kb on + strand, within MMP_RS03845 at 728.472 kb on + strand, within MMP_RS03845 at 728.583 kb on + strand, within MMP_RS03845 at 728.602 kb on + strand, within MMP_RS03845 at 728.626 kb on - strand, within MMP_RS03845 at 728.627 kb on + strand, within MMP_RS03845 at 728.627 kb on + strand, within MMP_RS03845 at 728.640 kb on - strand, within MMP_RS03845 at 728.641 kb on + strand, within MMP_RS03845 at 728.658 kb on - strand, within MMP_RS03845 at 728.704 kb on + strand, within MMP_RS03845 at 728.777 kb on - strand at 728.823 kb on - strand at 728.823 kb on - strand at 728.823 kb on - strand at 728.824 kb on + strand at 728.951 kb on + strand, within MMP_RS08990 at 728.952 kb on - strand, within MMP_RS08990 at 728.952 kb on - strand, within MMP_RS08990 at 728.953 kb on + strand, within MMP_RS08990 at 728.984 kb on - strand at 728.985 kb on + strand at 728.985 kb on + strand at 728.985 kb on + strand at 728.997 kb on - strand at 728.997 kb on - strand at 728.998 kb on + strand at 728.998 kb on + strand at 728.998 kb on + strand at 729.003 kb on + strand at 729.033 kb on - strand at 729.034 kb on + strand at 729.042 kb on - strand at 729.042 kb on - strand at 729.042 kb on - strand at 729.047 kb on - strand at 729.047 kb on - strand at 729.048 kb on + strand at 729.070 kb on - strand at 729.076 kb on + strand at 729.080 kb on - strand at 729.089 kb on - strand at 729.120 kb on + strand at 729.120 kb on + strand at 729.168 kb on + strand at 729.178 kb on - strand at 729.180 kb on - strand at 729.180 kb on - strand at 729.181 kb on + strand at 729.181 kb on + strand at 729.219 kb on + strand at 729.384 kb on + strand at 729.387 kb on - strand at 729.388 kb on + strand at 729.419 kb on + strand at 729.755 kb on + strand at 729.760 kb on - strand at 729.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 727,848 + -0.2 727,873 - +0.8 727,878 - +1.3 727,879 + -0.4 728,024 + MMP_RS03845 0.16 +0.4 728,075 - MMP_RS03845 0.21 +0.9 728,198 + MMP_RS03845 0.35 +1.1 728,219 + MMP_RS03845 0.37 +1.2 728,323 + MMP_RS03845 0.48 -0.7 728,382 + MMP_RS03845 0.55 -2.0 728,472 + MMP_RS03845 0.64 +0.4 728,583 + MMP_RS03845 0.76 -2.5 728,602 + MMP_RS03845 0.79 -1.5 728,626 - MMP_RS03845 0.81 -1.6 728,627 + MMP_RS03845 0.81 -1.1 728,627 + MMP_RS03845 0.81 -0.0 728,640 - MMP_RS03845 0.83 -1.1 728,641 + MMP_RS03845 0.83 -4.1 728,658 - MMP_RS03845 0.85 +0.3 728,704 + MMP_RS03845 0.90 -1.0 728,777 - -3.1 728,823 - -0.1 728,823 - -0.9 728,823 - +0.3 728,824 + -0.2 728,951 + MMP_RS08990 0.73 -0.5 728,952 - MMP_RS08990 0.73 -0.2 728,952 - MMP_RS08990 0.73 -2.2 728,953 + MMP_RS08990 0.74 +0.5 728,984 - +0.1 728,985 + -2.9 728,985 + -1.9 728,985 + -0.5 728,997 - +0.5 728,997 - +1.7 728,998 + +0.1 728,998 + +0.6 728,998 + -0.8 729,003 + -0.3 729,033 - +0.1 729,034 + +2.2 729,042 - +0.5 729,042 - +0.2 729,042 - +0.6 729,047 - +1.6 729,047 - +2.1 729,048 + -1.0 729,070 - +1.7 729,076 + -4.4 729,080 - -1.1 729,089 - -4.1 729,120 + -3.0 729,120 + -0.2 729,168 + -3.5 729,178 - -4.4 729,180 - -2.5 729,180 - -3.7 729,181 + -3.4 729,181 + -1.4 729,219 + -1.5 729,384 + +1.1 729,387 - -2.5 729,388 + -2.7 729,419 + -2.9 729,755 + -3.9 729,760 - -3.9 729,986 + -4.3
Or see this region's nucleotide sequence