Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05860 and MMP_RS05865 are separated by 185 nucleotides MMP_RS05865 and MMP_RS05870 are separated by 201 nucleotides MMP_RS05870 and MMP_RS05875 are separated by 209 nucleotides
MMP_RS05860: MMP_RS05860 - FprA family A-type flavoprotein, at 1,125,405 to 1,126,625
_RS05860
MMP_RS05865: MMP_RS05865 - hypothetical protein, at 1,126,811 to 1,127,230
_RS05865
MMP_RS05870: MMP_RS05870 - Lrp/AsnC family transcriptional regulator, at 1,127,432 to 1,127,854
_RS05870
MMP_RS05875: MMP_RS05875 - hydroxyethylthiazole kinase, at 1,128,064 to 1,128,864
_RS05875
Position (kb)
1126
1127
1128 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1126.555 kb on + strand at 1126.676 kb on - strand at 1126.687 kb on - strand at 1126.692 kb on + strand at 1126.697 kb on + strand at 1126.698 kb on - strand at 1126.723 kb on + strand at 1126.787 kb on + strand at 1126.787 kb on + strand at 1126.798 kb on - strand at 1126.798 kb on - strand at 1126.799 kb on + strand at 1126.799 kb on + strand at 1126.799 kb on + strand at 1126.819 kb on - strand at 1127.032 kb on + strand, within MMP_RS05865 at 1127.042 kb on + strand, within MMP_RS05865 at 1127.212 kb on + strand at 1127.215 kb on - strand at 1127.220 kb on + strand at 1127.258 kb on - strand at 1127.269 kb on + strand at 1127.316 kb on + strand at 1127.342 kb on - strand at 1127.438 kb on - strand at 1127.875 kb on - strand at 1127.875 kb on - strand at 1127.876 kb on + strand at 1127.876 kb on + strand at 1127.929 kb on - strand at 1127.930 kb on + strand at 1127.932 kb on + strand at 1127.933 kb on - strand at 1127.934 kb on + strand at 1127.952 kb on - strand at 1128.015 kb on - strand at 1128.015 kb on - strand at 1128.015 kb on - strand at 1128.015 kb on - strand at 1128.018 kb on + strand at 1128.018 kb on + strand at 1128.030 kb on + strand at 1128.040 kb on + strand at 1128.074 kb on - strand at 1128.075 kb on + strand at 1128.134 kb on + strand at 1128.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 1,126,555 + -1.1 1,126,676 - -0.6 1,126,687 - -2.1 1,126,692 + -2.0 1,126,697 + -3.0 1,126,698 - -6.4 1,126,723 + -0.1 1,126,787 + +0.0 1,126,787 + -2.3 1,126,798 - -0.7 1,126,798 - -1.3 1,126,799 + -2.6 1,126,799 + -2.2 1,126,799 + -2.2 1,126,819 - -2.9 1,127,032 + MMP_RS05865 0.53 -0.9 1,127,042 + MMP_RS05865 0.55 -2.5 1,127,212 + -1.1 1,127,215 - -4.2 1,127,220 + -0.5 1,127,258 - -0.6 1,127,269 + +0.3 1,127,316 + +0.3 1,127,342 - +0.5 1,127,438 - +0.9 1,127,875 - -3.3 1,127,875 - +0.2 1,127,876 + -1.5 1,127,876 + -1.3 1,127,929 - +1.0 1,127,930 + +0.9 1,127,932 + +0.6 1,127,933 - +1.5 1,127,934 + +0.7 1,127,952 - +0.8 1,128,015 - -3.4 1,128,015 - -1.3 1,128,015 - -2.4 1,128,015 - -1.5 1,128,018 + +1.2 1,128,018 + -0.0 1,128,030 + -0.2 1,128,040 + -1.3 1,128,074 - -3.1 1,128,075 + -0.5 1,128,134 + +0.2 1,128,140 - -3.2
Or see this region's nucleotide sequence