Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05465

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,046,823	+		MMP_RS05460	0.22	-0.0
1,046,904	-		MMP_RS05460	0.28	+1.1
1,047,111	-		MMP_RS05460	0.45	+1.1
1,047,112	+		MMP_RS05460	0.46	+1.4
1,047,168	-		MMP_RS05460	0.50	+0.1
1,047,242	+		MMP_RS05460	0.56	+0.3
1,047,243	-		MMP_RS05460	0.56	+0.8
1,047,327	-		MMP_RS05460	0.63	+2.0
1,047,352	+		MMP_RS05460	0.66	+1.2
1,047,352	+		MMP_RS05460	0.66	+0.8
1,047,373	+		MMP_RS05460	0.67	+0.9
1,047,502	-		MMP_RS05460	0.78	+0.6
1,047,635	+		MMP_RS05460	0.89	+2.0
1,047,645	-		MMP_RS05460	0.90	+1.6
1,047,645	-		MMP_RS05460	0.90	+1.6
1,047,645	-		MMP_RS05460	0.90	+1.6
1,047,645	-		MMP_RS05460	0.90	+0.0
1,047,646	+				-0.4
1,047,646	+				+0.6
1,047,646	+				-0.5
1,047,646	+				-0.3
1,047,684	+				-1.2
1,047,701	+				-1.0
1,047,718	-				-2.4
1,047,725	+				+0.1
1,047,753	-				-0.6
1,047,753	-				+1.1
1,047,754	+				+0.3
1,047,760	+				+0.8
1,047,807	-				+1.2
1,047,838	-				+0.8
1,047,839	+				+1.1
1,047,901	+		MMP_RS05465	0.13	+0.3
1,047,961	+		MMP_RS05465	0.19	-0.3
1,047,964	+		MMP_RS05465	0.19	+0.9
1,047,994	-		MMP_RS05465	0.22	+0.1
1,047,994	-		MMP_RS05465	0.22	+2.1
1,048,000	+		MMP_RS05465	0.22	+1.4
1,048,000	+		MMP_RS05465	0.22	-3.8
1,048,000	+		MMP_RS05465	0.22	-0.1
1,048,000	+		MMP_RS05465	0.22	+0.6
1,048,001	-		MMP_RS05465	0.22	+0.5
1,048,001	-		MMP_RS05465	0.22	+0.2
1,048,002	+		MMP_RS05465	0.23	-1.7
1,048,008	-		MMP_RS05465	0.23	-0.4
1,048,012	+		MMP_RS05465	0.23	+1.6
1,048,013	-		MMP_RS05465	0.24	+1.0
1,048,013	-		MMP_RS05465	0.24	+2.1
1,048,023	-		MMP_RS05465	0.24	+3.2
1,048,084	-		MMP_RS05465	0.30	+0.9
1,048,084	-		MMP_RS05465	0.30	+0.4
1,048,084	-		MMP_RS05465	0.30	-0.1
1,048,084	-		MMP_RS05465	0.30	+1.6
1,048,084	-		MMP_RS05465	0.30	-3.2
1,048,084	-		MMP_RS05465	0.30	+1.2
1,048,084	-		MMP_RS05465	0.30	-0.5
1,048,085	+		MMP_RS05465	0.30	+0.4
1,048,085	+		MMP_RS05465	0.30	+1.3
1,048,085	+		MMP_RS05465	0.30	+0.9
1,048,085	+		MMP_RS05465	0.30	-4.7
1,048,086	-		MMP_RS05465	0.30	+0.7
1,048,086	-		MMP_RS05465	0.30	+0.1
1,048,086	-		MMP_RS05465	0.30	+1.0
1,048,087	+		MMP_RS05465	0.31	-1.4
1,048,087	+		MMP_RS05465	0.31	+1.5
1,048,124	+		MMP_RS05465	0.34	+0.9
1,048,125	-		MMP_RS05465	0.34	-1.5
1,048,125	-		MMP_RS05465	0.34	+2.0
1,048,125	-		MMP_RS05465	0.34	-0.1
1,048,125	-		MMP_RS05465	0.34	+0.5
1,048,125	-		MMP_RS05465	0.34	-0.6
1,048,126	+		MMP_RS05465	0.34	+1.3
1,048,126	+		MMP_RS05465	0.34	+1.3
1,048,126	+		MMP_RS05465	0.34	+1.2
1,048,149	-		MMP_RS05465	0.36	+1.7
1,048,149	-		MMP_RS05465	0.36	+1.2
1,048,150	+		MMP_RS05465	0.36	-0.9
1,048,150	+		MMP_RS05465	0.36	+0.9
1,048,162	-		MMP_RS05465	0.38	+1.1
1,048,166	+		MMP_RS05465	0.38	+1.1
1,048,171	+		MMP_RS05465	0.38	+1.2
1,048,226	-		MMP_RS05465	0.44	+0.3
1,048,226	-		MMP_RS05465	0.44	+1.3
1,048,227	+		MMP_RS05465	0.44	-0.3
1,048,227	+		MMP_RS05465	0.44	-0.9
1,048,227	+		MMP_RS05465	0.44	+0.2
1,048,246	-		MMP_RS05465	0.45	+1.0
1,048,246	-		MMP_RS05465	0.45	-2.1
1,048,247	+		MMP_RS05465	0.46	+1.8
1,048,259	+		MMP_RS05465	0.47	-1.3
1,048,259	+		MMP_RS05465	0.47	+1.6
1,048,261	-		MMP_RS05465	0.47	+0.7
1,048,262	+		MMP_RS05465	0.47	-2.9
1,048,262	+		MMP_RS05465	0.47	+0.6
1,048,262	+		MMP_RS05465	0.47	-0.5
1,048,264	+		MMP_RS05465	0.47	+1.1
1,048,300	+		MMP_RS05465	0.51	-0.6
1,048,353	-		MMP_RS05465	0.56	+0.2
1,048,353	-		MMP_RS05465	0.56	-0.3
1,048,354	+		MMP_RS05465	0.56	+1.0
1,048,420	+		MMP_RS05465	0.62	-1.3
1,048,438	-		MMP_RS05465	0.64	-0.4
1,048,528	-		MMP_RS05465	0.72	+0.2
1,048,600	+		MMP_RS05465	0.79	-0.7
1,048,616	+		MMP_RS05465	0.80	-2.4
1,048,713	+		MMP_RS05465	0.89	-2.5
1,048,803	-				+1.3
1,048,829	-				+0.6
1,048,829	-				+0.3
1,048,829	-				-1.1
1,048,829	-				-0.8
1,048,829	-				-0.7
1,048,830	+				+0.8
1,048,838	-				+1.0
1,048,839	+				+1.2
1,048,839	+				+0.2
1,048,843	-				+1.3
1,048,847	-				+2.4
1,048,847	-				-1.8
1,048,848	+				+1.7
1,048,852	+				-0.9
1,048,853	-				+1.2
1,049,049	-		MMP_RS05470	0.15	+0.2
1,049,123	+		MMP_RS05470	0.23	+1.5
1,049,135	-		MMP_RS05470	0.24	+2.1
1,049,206	+		MMP_RS05470	0.31	+0.1
1,049,233	+		MMP_RS05470	0.34	+0.4
1,049,250	+		MMP_RS05470	0.36	+2.2
1,049,368	+		MMP_RS05470	0.48	-0.7
1,049,391	-		MMP_RS05470	0.51	-0.7
1,049,391	-		MMP_RS05470	0.51	+0.6
1,049,396	+		MMP_RS05470	0.51	-2.4
1,049,396	+		MMP_RS05470	0.51	+0.1
1,049,534	+		MMP_RS05470	0.65	-0.8
1,049,583	-		MMP_RS05470	0.70	-2.3
1,049,647	-		MMP_RS05470	0.77	+0.2
1,049,647	-		MMP_RS05470	0.77	-0.3
1,049,647	-		MMP_RS05470	0.77	+1.9
1,049,648	+		MMP_RS05470	0.77	-3.5
1,049,648	+		MMP_RS05470	0.77	+0.8
1,049,683	+		MMP_RS05470	0.81	-1.4
1,049,683	+		MMP_RS05470	0.81	-1.0
1,049,799	+				-0.4