Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05150

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05135 and MMP_RS05140 are separated by 118 nucleotidesMMP_RS05140 and MMP_RS05145 overlap by 4 nucleotidesMMP_RS05145 and MMP_RS05150 are separated by 9 nucleotidesMMP_RS05150 and MMP_RS05155 are separated by 157 nucleotidesMMP_RS05155 and MMP_RS05160 are separated by 231 nucleotides MMP_RS05135: MMP_RS05135 - hypothetical protein, at 980,566 to 981,087 _RS05135 MMP_RS05140: MMP_RS05140 - helix-turn-helix transcriptional regulator, at 981,206 to 981,406 _RS05140 MMP_RS05145: MMP_RS05145 - hypothetical protein, at 981,403 to 981,789 _RS05145 MMP_RS05150: MMP_RS05150 - hypothetical protein, at 981,799 to 982,230 _RS05150 MMP_RS05155: MMP_RS05155 - hypothetical protein, at 982,388 to 982,651 _RS05155 MMP_RS05160: MMP_RS05160 - cupredoxin family copper-binding protein, at 982,883 to 983,239 _RS05160 Position (kb) 981 982 983Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 980.805 kb on - strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.805 kb on - strand, within MMP_RS05135at 980.879 kb on + strand, within MMP_RS05135at 980.879 kb on + strand, within MMP_RS05135at 980.936 kb on - strand, within MMP_RS05135at 980.953 kb on - strand, within MMP_RS05135at 980.954 kb on + strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.957 kb on - strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.958 kb on + strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.959 kb on - strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.960 kb on + strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.961 kb on - strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.962 kb on + strand, within MMP_RS05135at 980.963 kb on - strand, within MMP_RS05135at 980.964 kb on + strand, within MMP_RS05135at 980.996 kb on + strand, within MMP_RS05135at 980.998 kb on + strand, within MMP_RS05135at 981.230 kb on - strand, within MMP_RS05140at 981.239 kb on - strand, within MMP_RS05140at 981.392 kb on - strandat 981.442 kb on - strand, within MMP_RS05145at 981.499 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.513 kb on - strand, within MMP_RS05145at 981.569 kb on - strand, within MMP_RS05145at 981.582 kb on - strand, within MMP_RS05145at 981.634 kb on - strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.635 kb on + strand, within MMP_RS05145at 981.652 kb on + strand, within MMP_RS05145at 981.652 kb on + strand, within MMP_RS05145at 981.653 kb on - strand, within MMP_RS05145at 981.653 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.655 kb on - strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.656 kb on + strand, within MMP_RS05145at 981.659 kb on + strand, within MMP_RS05145at 981.679 kb on - strand, within MMP_RS05145at 981.694 kb on - strand, within MMP_RS05145at 981.695 kb on + strand, within MMP_RS05145at 981.719 kb on - strand, within MMP_RS05145at 981.749 kb on + strand, within MMP_RS05145at 981.825 kb on + strandat 981.842 kb on + strandat 981.871 kb on - strand, within MMP_RS05150at 981.871 kb on - strand, within MMP_RS05150at 981.887 kb on - strand, within MMP_RS05150at 981.888 kb on + strand, within MMP_RS05150at 981.924 kb on + strand, within MMP_RS05150at 981.989 kb on + strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 981.991 kb on - strand, within MMP_RS05150at 982.124 kb on - strand, within MMP_RS05150at 982.125 kb on + strand, within MMP_RS05150at 982.316 kb on - strandat 982.360 kb on - strandat 982.435 kb on + strand, within MMP_RS05155at 982.435 kb on + strand, within MMP_RS05155at 982.502 kb on - strand, within MMP_RS05155at 982.502 kb on - strand, within MMP_RS05155at 982.503 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.611 kb on + strand, within MMP_RS05155at 982.666 kb on - strandat 982.667 kb on + strandat 982.667 kb on + strandat 982.727 kb on + strandat 982.773 kb on + strandat 982.830 kb on - strandat 982.852 kb on - strandat 982.874 kb on + strandat 982.914 kb on - strandat 982.915 kb on + strandat 982.928 kb on + strand, within MMP_RS05160at 982.928 kb on + strand, within MMP_RS05160at 982.928 kb on + strand, within MMP_RS05160at 982.932 kb on - strand, within MMP_RS05160at 982.936 kb on + strand, within MMP_RS05160at 982.940 kb on + strand, within MMP_RS05160at 982.940 kb on + strand, within MMP_RS05160at 982.941 kb on - strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.942 kb on + strand, within MMP_RS05160at 982.949 kb on - strand, within MMP_RS05160at 982.963 kb on - strand, within MMP_RS05160at 982.964 kb on + strand, within MMP_RS05160at 983.007 kb on + strand, within MMP_RS05160at 983.024 kb on - strand, within MMP_RS05160at 983.024 kb on - strand, within MMP_RS05160at 983.156 kb on + strand, within MMP_RS05160at 983.217 kb on + strandat 983.219 kb on - strandat 983.220 kb on + strandat 983.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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980,805 - MMP_RS05135 0.46 +0.9
980,805 - MMP_RS05135 0.46 +0.4
980,805 - MMP_RS05135 0.46 +0.3
980,879 + MMP_RS05135 0.60 +0.0
980,879 + MMP_RS05135 0.60 +0.0
980,936 - MMP_RS05135 0.71 +1.0
980,953 - MMP_RS05135 0.74 -0.9
980,954 + MMP_RS05135 0.74 +0.1
980,957 - MMP_RS05135 0.75 +0.8
980,957 - MMP_RS05135 0.75 +1.0
980,957 - MMP_RS05135 0.75 -0.0
980,957 - MMP_RS05135 0.75 -0.7
980,957 - MMP_RS05135 0.75 +0.0
980,957 - MMP_RS05135 0.75 +0.7
980,957 - MMP_RS05135 0.75 -0.3
980,958 + MMP_RS05135 0.75 +0.6
980,958 + MMP_RS05135 0.75 +0.2
980,958 + MMP_RS05135 0.75 -0.9
980,958 + MMP_RS05135 0.75 -1.4
980,958 + MMP_RS05135 0.75 +0.7
980,958 + MMP_RS05135 0.75 +0.5
980,958 + MMP_RS05135 0.75 -3.9
980,958 + MMP_RS05135 0.75 +1.2
980,958 + MMP_RS05135 0.75 +0.6
980,958 + MMP_RS05135 0.75 +0.4
980,958 + MMP_RS05135 0.75 -1.7
980,958 + MMP_RS05135 0.75 +1.9
980,958 + MMP_RS05135 0.75 +0.7
980,958 + MMP_RS05135 0.75 -0.9
980,959 - MMP_RS05135 0.75 -1.0
980,959 - MMP_RS05135 0.75 -0.6
980,959 - MMP_RS05135 0.75 -2.6
980,959 - MMP_RS05135 0.75 -1.5
980,959 - MMP_RS05135 0.75 -0.5
980,959 - MMP_RS05135 0.75 +2.0
980,959 - MMP_RS05135 0.75 -3.0
980,959 - MMP_RS05135 0.75 -0.6
980,959 - MMP_RS05135 0.75 -0.4
980,959 - MMP_RS05135 0.75 -0.5
980,960 + MMP_RS05135 0.75 -3.0
980,960 + MMP_RS05135 0.75 +0.4
980,960 + MMP_RS05135 0.75 +1.1
980,960 + MMP_RS05135 0.75 -0.6
980,960 + MMP_RS05135 0.75 +0.1
980,960 + MMP_RS05135 0.75 +0.5
980,960 + MMP_RS05135 0.75 -1.5
980,960 + MMP_RS05135 0.75 +0.8
980,960 + MMP_RS05135 0.75 -2.9
980,960 + MMP_RS05135 0.75 +0.9
980,960 + MMP_RS05135 0.75 +2.1
980,960 + MMP_RS05135 0.75 -1.8
980,960 + MMP_RS05135 0.75 +0.6
980,960 + MMP_RS05135 0.75 -0.8
980,960 + MMP_RS05135 0.75 -0.4
980,960 + MMP_RS05135 0.75 +1.0
980,960 + MMP_RS05135 0.75 -0.4
980,960 + MMP_RS05135 0.75 -0.2
980,961 - MMP_RS05135 0.76 -0.1
980,961 - MMP_RS05135 0.76 +1.3
980,961 - MMP_RS05135 0.76 -1.1
980,961 - MMP_RS05135 0.76 +0.5
980,961 - MMP_RS05135 0.76 +0.4
980,961 - MMP_RS05135 0.76 +0.3
980,961 - MMP_RS05135 0.76 -1.3
980,961 - MMP_RS05135 0.76 +2.5
980,961 - MMP_RS05135 0.76 -0.1
980,961 - MMP_RS05135 0.76 +0.9
980,962 + MMP_RS05135 0.76 -1.3
980,962 + MMP_RS05135 0.76 -0.3
980,962 + MMP_RS05135 0.76 +0.0
980,962 + MMP_RS05135 0.76 +0.9
980,962 + MMP_RS05135 0.76 +0.1
980,962 + MMP_RS05135 0.76 +1.4
980,962 + MMP_RS05135 0.76 +0.6
980,962 + MMP_RS05135 0.76 +1.0
980,963 - MMP_RS05135 0.76 +1.0
980,964 + MMP_RS05135 0.76 +0.0
980,996 + MMP_RS05135 0.82 +0.3
980,998 + MMP_RS05135 0.83 +1.0
981,230 - MMP_RS05140 0.12 +0.4
981,239 - MMP_RS05140 0.16 +0.0
981,392 - -0.5
981,442 - MMP_RS05145 0.10 -0.5
981,499 - MMP_RS05145 0.25 +0.5
981,513 - MMP_RS05145 0.28 -1.0
981,513 - MMP_RS05145 0.28 +0.5
981,569 - MMP_RS05145 0.43 +1.6
981,582 - MMP_RS05145 0.46 +0.9
981,634 - MMP_RS05145 0.60 +0.0
981,635 + MMP_RS05145 0.60 +0.1
981,635 + MMP_RS05145 0.60 -0.9
981,635 + MMP_RS05145 0.60 +1.5
981,635 + MMP_RS05145 0.60 -0.7
981,652 + MMP_RS05145 0.64 -0.1
981,652 + MMP_RS05145 0.64 -1.6
981,653 - MMP_RS05145 0.65 -0.7
981,653 - MMP_RS05145 0.65 +1.2
981,655 - MMP_RS05145 0.65 -2.7
981,655 - MMP_RS05145 0.65 -0.3
981,655 - MMP_RS05145 0.65 -0.2
981,655 - MMP_RS05145 0.65 -0.0
981,656 + MMP_RS05145 0.65 +0.8
981,656 + MMP_RS05145 0.65 +0.3
981,656 + MMP_RS05145 0.65 -0.1
981,659 + MMP_RS05145 0.66 -0.4
981,679 - MMP_RS05145 0.71 -3.3
981,694 - MMP_RS05145 0.75 +0.3
981,695 + MMP_RS05145 0.75 +0.9
981,719 - MMP_RS05145 0.82 -3.2
981,749 + MMP_RS05145 0.89 -0.1
981,825 + +0.0
981,842 + +0.7
981,871 - MMP_RS05150 0.17 +0.9
981,871 - MMP_RS05150 0.17 +1.1
981,887 - MMP_RS05150 0.20 -0.3
981,888 + MMP_RS05150 0.21 +3.7
981,924 + MMP_RS05150 0.29 +2.4
981,989 + MMP_RS05150 0.44 -2.0
981,991 - MMP_RS05150 0.44 +1.4
981,991 - MMP_RS05150 0.44 +1.7
982,124 - MMP_RS05150 0.75 +0.0
982,125 + MMP_RS05150 0.75 +0.7
982,316 - -0.9
982,360 - +0.4
982,435 + MMP_RS05155 0.18 +0.8
982,435 + MMP_RS05155 0.18 +0.3
982,502 - MMP_RS05155 0.43 -1.4
982,502 - MMP_RS05155 0.43 -1.6
982,503 + MMP_RS05155 0.44 +0.4
982,611 + MMP_RS05155 0.84 -0.4
982,611 + MMP_RS05155 0.84 +1.2
982,611 + MMP_RS05155 0.84 +1.8
982,666 - +1.1
982,667 + -4.7
982,667 + +1.6
982,727 + +1.8
982,773 + +0.2
982,830 - -0.0
982,852 - -1.1
982,874 + +1.8
982,914 - +0.4
982,915 + +0.7
982,928 + MMP_RS05160 0.13 +0.1
982,928 + MMP_RS05160 0.13 +1.0
982,928 + MMP_RS05160 0.13 +1.8
982,932 - MMP_RS05160 0.14 +2.0
982,936 + MMP_RS05160 0.15 -0.6
982,940 + MMP_RS05160 0.16 +0.5
982,940 + MMP_RS05160 0.16 -1.7
982,941 - MMP_RS05160 0.16 +1.4
982,942 + MMP_RS05160 0.17 +1.4
982,942 + MMP_RS05160 0.17 +0.3
982,942 + MMP_RS05160 0.17 +0.9
982,949 - MMP_RS05160 0.18 -0.1
982,963 - MMP_RS05160 0.22 -0.5
982,964 + MMP_RS05160 0.23 +0.9
983,007 + MMP_RS05160 0.35 +1.1
983,024 - MMP_RS05160 0.39 -0.9
983,024 - MMP_RS05160 0.39 +0.1
983,156 + MMP_RS05160 0.76 -0.3
983,217 + +1.0
983,219 - +1.6
983,220 + +0.6
983,220 + +0.8

Or see this region's nucleotide sequence